Experiment: Mc formate, casamino free, with 10mM L-Tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04545 and MMP_RS04550 are separated by 452 nucleotides MMP_RS04550 and MMP_RS04555 are separated by 9 nucleotides
MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458
_RS04545
MMP_RS04550: MMP_RS04550 - S-layer protein, at 867,911 to 869,512
_RS04550
MMP_RS04555: MMP_RS04555 - 7 8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 869,522 to 870,580
_RS04555
Position (kb) 867
868
869
870 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 866.914 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.916 kb on - strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.917 kb on + strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.919 kb on - strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.920 kb on + strand, within MMP_RS04545 at 866.925 kb on + strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.926 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.938 kb on - strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.939 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.997 kb on + strand, within MMP_RS04545 at 866.999 kb on - strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.000 kb on + strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.001 kb on - strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.002 kb on + strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.003 kb on - strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.004 kb on + strand, within MMP_RS04545 at 867.036 kb on - strand, within MMP_RS04545 at 867.042 kb on + strand, within MMP_RS04545 at 867.061 kb on - strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.062 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.100 kb on + strand, within MMP_RS04545 at 867.124 kb on + strand, within MMP_RS04545 at 867.137 kb on - strand, within MMP_RS04545 at 867.140 kb on - strand, within MMP_RS04545 at 867.141 kb on + strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.150 kb on - strand, within MMP_RS04545 at 867.156 kb on + strand, within MMP_RS04545 at 867.180 kb on - strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.181 kb on + strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.182 kb on - strand, within MMP_RS04545 at 867.183 kb on + strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.186 kb on - strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.187 kb on + strand, within MMP_RS04545 at 867.261 kb on + strand, within MMP_RS04545 at 867.269 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.326 kb on - strand, within MMP_RS04545 at 867.364 kb on - strand, within MMP_RS04545 at 867.365 kb on + strand, within MMP_RS04545 at 867.555 kb on + strand at 867.555 kb on + strand at 867.568 kb on - strand at 867.684 kb on - strand at 867.733 kb on - strand at 867.733 kb on - strand at 867.733 kb on - strand at 867.734 kb on + strand at 867.734 kb on + strand at 867.737 kb on - strand at 867.738 kb on + strand at 867.738 kb on + strand at 867.743 kb on - strand at 867.743 kb on - strand at 867.744 kb on + strand at 867.744 kb on + strand at 867.747 kb on - strand at 867.748 kb on + strand at 867.879 kb on + strand at 867.897 kb on + strand at 867.897 kb on + strand at 867.909 kb on + strand at 867.919 kb on - strand at 867.923 kb on + strand at 868.014 kb on - strand at 868.014 kb on - strand at 868.057 kb on - strand at 868.057 kb on - strand at 868.067 kb on + strand at 868.146 kb on - strand, within MMP_RS04550 at 868.198 kb on - strand, within MMP_RS04550 at 868.218 kb on - strand, within MMP_RS04550 at 868.272 kb on + strand, within MMP_RS04550 at 868.272 kb on + strand, within MMP_RS04550 at 868.276 kb on + strand, within MMP_RS04550 at 868.276 kb on + strand, within MMP_RS04550 at 868.279 kb on - strand, within MMP_RS04550 at 868.280 kb on + strand, within MMP_RS04550 at 868.280 kb on + strand, within MMP_RS04550 at 868.303 kb on - strand, within MMP_RS04550 at 868.490 kb on - strand, within MMP_RS04550 at 868.490 kb on - strand, within MMP_RS04550 at 868.491 kb on + strand, within MMP_RS04550 at 868.491 kb on + strand, within MMP_RS04550 at 868.492 kb on - strand, within MMP_RS04550 at 868.492 kb on - strand, within MMP_RS04550 at 868.493 kb on + strand, within MMP_RS04550 at 868.493 kb on + strand, within MMP_RS04550 at 868.493 kb on + strand, within MMP_RS04550 at 868.493 kb on + strand, within MMP_RS04550 at 868.501 kb on + strand, within MMP_RS04550 at 868.536 kb on - strand, within MMP_RS04550 at 868.562 kb on + strand, within MMP_RS04550 at 868.569 kb on + strand, within MMP_RS04550 at 868.591 kb on + strand, within MMP_RS04550 at 868.671 kb on + strand, within MMP_RS04550 at 868.723 kb on - strand, within MMP_RS04550 at 868.724 kb on + strand, within MMP_RS04550 at 868.727 kb on - strand, within MMP_RS04550 at 868.728 kb on + strand, within MMP_RS04550 at 868.728 kb on + strand, within MMP_RS04550 at 868.730 kb on + strand, within MMP_RS04550 at 868.734 kb on - strand, within MMP_RS04550 at 868.734 kb on - strand, within MMP_RS04550 at 868.735 kb on + strand, within MMP_RS04550 at 868.749 kb on - strand, within MMP_RS04550 at 868.778 kb on - strand, within MMP_RS04550 at 868.846 kb on - strand, within MMP_RS04550 at 868.878 kb on - strand, within MMP_RS04550 at 868.932 kb on + strand, within MMP_RS04550 at 868.950 kb on - strand, within MMP_RS04550 at 868.951 kb on + strand, within MMP_RS04550 at 868.952 kb on - strand, within MMP_RS04550 at 868.953 kb on + strand, within MMP_RS04550 at 868.954 kb on - strand, within MMP_RS04550 at 869.006 kb on + strand, within MMP_RS04550 at 869.024 kb on - strand, within MMP_RS04550 at 869.025 kb on + strand, within MMP_RS04550 at 869.025 kb on + strand, within MMP_RS04550 at 869.062 kb on - strand, within MMP_RS04550 at 869.063 kb on + strand, within MMP_RS04550 at 869.122 kb on - strand, within MMP_RS04550 at 869.122 kb on - strand, within MMP_RS04550 at 869.122 kb on - strand, within MMP_RS04550 at 869.122 kb on - strand, within MMP_RS04550 at 869.122 kb on - strand, within MMP_RS04550 at 869.122 kb on - strand, within MMP_RS04550 at 869.123 kb on + strand, within MMP_RS04550 at 869.123 kb on + strand, within MMP_RS04550 at 869.123 kb on + strand, within MMP_RS04550 at 869.123 kb on + strand, within MMP_RS04550 at 869.133 kb on - strand, within MMP_RS04550 at 869.134 kb on + strand, within MMP_RS04550 at 869.134 kb on + strand, within MMP_RS04550 at 869.167 kb on - strand, within MMP_RS04550 at 869.168 kb on + strand, within MMP_RS04550 at 869.170 kb on + strand, within MMP_RS04550 at 869.223 kb on - strand, within MMP_RS04550 at 869.223 kb on - strand, within MMP_RS04550 at 869.223 kb on - strand, within MMP_RS04550 at 869.253 kb on - strand, within MMP_RS04550 at 869.274 kb on - strand, within MMP_RS04550 at 869.275 kb on + strand, within MMP_RS04550 at 869.320 kb on + strand, within MMP_RS04550 at 869.358 kb on - strand at 869.362 kb on + strand at 869.406 kb on - strand at 869.464 kb on - strand at 869.465 kb on + strand at 869.518 kb on - strand at 869.524 kb on + strand at 869.569 kb on - strand at 869.570 kb on + strand at 869.572 kb on - strand at 869.574 kb on - strand at 869.575 kb on + strand at 869.575 kb on + strand at 869.609 kb on + strand at 869.876 kb on + strand at 869.940 kb on + strand at 869.980 kb on - strand at 869.985 kb on + strand at 869.996 kb on + strand at 870.047 kb on + strand at 870.167 kb on - strand at 870.173 kb on + strand at 870.225 kb on + strand at 870.225 kb on + strand at 870.225 kb on + strand at 870.242 kb on - strand at 870.353 kb on + strand at 870.406 kb on - strand at 870.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Tyrosine remove 866,914 - MMP_RS04545 0.32 -0.3 866,916 - MMP_RS04545 0.32 -0.0 866,916 - MMP_RS04545 0.32 -0.3 866,916 - MMP_RS04545 0.32 -0.6 866,916 - MMP_RS04545 0.32 +0.4 866,917 + MMP_RS04545 0.32 -0.3 866,917 + MMP_RS04545 0.32 -0.3 866,917 + MMP_RS04545 0.32 +0.7 866,917 + MMP_RS04545 0.32 -0.6 866,919 - MMP_RS04545 0.32 -0.1 866,919 - MMP_RS04545 0.32 +0.1 866,920 + MMP_RS04545 0.32 -0.2 866,920 + MMP_RS04545 0.32 -0.2 866,920 + MMP_RS04545 0.32 -0.0 866,920 + MMP_RS04545 0.32 -2.1 866,920 + MMP_RS04545 0.32 +0.2 866,920 + MMP_RS04545 0.32 +0.3 866,920 + MMP_RS04545 0.32 +0.6 866,925 + MMP_RS04545 0.33 -0.3 866,926 - MMP_RS04545 0.33 +0.0 866,926 - MMP_RS04545 0.33 +0.3 866,926 - MMP_RS04545 0.33 +0.1 866,938 - MMP_RS04545 0.35 +0.5 866,938 - MMP_RS04545 0.35 -0.3 866,938 - MMP_RS04545 0.35 +0.1 866,939 + MMP_RS04545 0.35 +0.2 866,939 + MMP_RS04545 0.35 -0.1 866,997 + MMP_RS04545 0.42 -0.3 866,997 + MMP_RS04545 0.42 +0.1 866,999 - MMP_RS04545 0.42 +0.2 867,000 + MMP_RS04545 0.42 -0.3 867,000 + MMP_RS04545 0.42 +0.3 867,000 + MMP_RS04545 0.42 +0.1 867,001 - MMP_RS04545 0.43 +0.0 867,001 - MMP_RS04545 0.43 +0.2 867,001 - MMP_RS04545 0.43 +0.0 867,001 - MMP_RS04545 0.43 -0.2 867,001 - MMP_RS04545 0.43 -0.6 867,002 + MMP_RS04545 0.43 -0.1 867,002 + MMP_RS04545 0.43 -0.3 867,002 + MMP_RS04545 0.43 +0.2 867,002 + MMP_RS04545 0.43 +0.2 867,002 + MMP_RS04545 0.43 +0.4 867,002 + MMP_RS04545 0.43 +0.4 867,002 + MMP_RS04545 0.43 -0.3 867,003 - MMP_RS04545 0.43 +0.2 867,003 - MMP_RS04545 0.43 -0.3 867,003 - MMP_RS04545 0.43 -0.0 867,004 + MMP_RS04545 0.43 +1.0 867,004 + MMP_RS04545 0.43 +0.0 867,004 + MMP_RS04545 0.43 -1.1 867,004 + MMP_RS04545 0.43 -0.4 867,036 - MMP_RS04545 0.47 -1.5 867,042 + MMP_RS04545 0.48 +0.4 867,061 - MMP_RS04545 0.50 +0.1 867,062 + MMP_RS04545 0.50 +0.2 867,062 + MMP_RS04545 0.50 -0.2 867,100 + MMP_RS04545 0.55 -0.4 867,100 + MMP_RS04545 0.55 -0.6 867,124 + MMP_RS04545 0.58 -0.4 867,137 - MMP_RS04545 0.60 -0.0 867,140 - MMP_RS04545 0.60 +0.4 867,141 + MMP_RS04545 0.60 -0.4 867,150 - MMP_RS04545 0.61 +0.1 867,150 - MMP_RS04545 0.61 +0.5 867,156 + MMP_RS04545 0.62 +1.0 867,180 - MMP_RS04545 0.65 -0.3 867,181 + MMP_RS04545 0.65 +0.2 867,181 + MMP_RS04545 0.65 +0.1 867,182 - MMP_RS04545 0.65 +0.4 867,182 - MMP_RS04545 0.65 -0.5 867,183 + MMP_RS04545 0.65 +0.5 867,186 - MMP_RS04545 0.66 -0.8 867,186 - MMP_RS04545 0.66 +0.7 867,186 - MMP_RS04545 0.66 -0.4 867,186 - MMP_RS04545 0.66 +1.1 867,187 + MMP_RS04545 0.66 +0.4 867,187 + MMP_RS04545 0.66 -0.0 867,187 + MMP_RS04545 0.66 +0.0 867,187 + MMP_RS04545 0.66 +0.1 867,261 + MMP_RS04545 0.75 -1.5 867,269 - MMP_RS04545 0.76 +0.4 867,326 - MMP_RS04545 0.83 +0.4 867,326 - MMP_RS04545 0.83 -0.2 867,326 - MMP_RS04545 0.83 +0.1 867,326 - MMP_RS04545 0.83 -1.6 867,364 - MMP_RS04545 0.88 -0.1 867,365 + MMP_RS04545 0.88 -0.3 867,555 + +0.4 867,555 + +0.2 867,568 - +0.2 867,684 - +1.3 867,733 - +1.6 867,733 - +1.9 867,733 - +2.0 867,734 + +0.0 867,734 + +0.8 867,737 - +0.2 867,738 + +0.5 867,738 + +1.0 867,743 - +1.6 867,743 - +1.4 867,744 + +1.1 867,744 + +0.3 867,747 - -0.0 867,748 + +0.3 867,879 + +2.0 867,897 + +2.4 867,897 + +0.3 867,909 + +0.8 867,919 - +2.2 867,923 + +1.8 868,014 - -2.5 868,014 - +1.2 868,057 - +1.8 868,057 - +0.6 868,067 + +1.4 868,146 - MMP_RS04550 0.15 +1.0 868,198 - MMP_RS04550 0.18 +2.1 868,218 - MMP_RS04550 0.19 +1.7 868,272 + MMP_RS04550 0.23 +0.3 868,272 + MMP_RS04550 0.23 +1.6 868,276 + MMP_RS04550 0.23 +0.8 868,276 + MMP_RS04550 0.23 +0.5 868,279 - MMP_RS04550 0.23 +1.9 868,280 + MMP_RS04550 0.23 +0.5 868,280 + MMP_RS04550 0.23 +1.9 868,303 - MMP_RS04550 0.24 +0.5 868,490 - MMP_RS04550 0.36 +2.3 868,490 - MMP_RS04550 0.36 +2.4 868,491 + MMP_RS04550 0.36 +1.0 868,491 + MMP_RS04550 0.36 +0.4 868,492 - MMP_RS04550 0.36 +1.7 868,492 - MMP_RS04550 0.36 +0.4 868,493 + MMP_RS04550 0.36 -0.8 868,493 + MMP_RS04550 0.36 +0.7 868,493 + MMP_RS04550 0.36 +0.2 868,493 + MMP_RS04550 0.36 +2.2 868,501 + MMP_RS04550 0.37 -2.3 868,536 - MMP_RS04550 0.39 +0.2 868,562 + MMP_RS04550 0.41 +0.6 868,569 + MMP_RS04550 0.41 -0.1 868,591 + MMP_RS04550 0.42 +1.4 868,671 + MMP_RS04550 0.47 +1.0 868,723 - MMP_RS04550 0.51 -1.5 868,724 + MMP_RS04550 0.51 +0.4 868,727 - MMP_RS04550 0.51 +2.1 868,728 + MMP_RS04550 0.51 +1.0 868,728 + MMP_RS04550 0.51 +0.3 868,730 + MMP_RS04550 0.51 +1.5 868,734 - MMP_RS04550 0.51 +0.8 868,734 - MMP_RS04550 0.51 +0.1 868,735 + MMP_RS04550 0.51 +1.1 868,749 - MMP_RS04550 0.52 +1.5 868,778 - MMP_RS04550 0.54 +0.8 868,846 - MMP_RS04550 0.58 +2.5 868,878 - MMP_RS04550 0.60 +0.5 868,932 + MMP_RS04550 0.64 +0.5 868,950 - MMP_RS04550 0.65 +2.1 868,951 + MMP_RS04550 0.65 +2.1 868,952 - MMP_RS04550 0.65 +1.2 868,953 + MMP_RS04550 0.65 -1.8 868,954 - MMP_RS04550 0.65 +2.3 869,006 + MMP_RS04550 0.68 +2.0 869,024 - MMP_RS04550 0.69 +1.5 869,025 + MMP_RS04550 0.70 +1.7 869,025 + MMP_RS04550 0.70 +1.9 869,062 - MMP_RS04550 0.72 +1.7 869,063 + MMP_RS04550 0.72 -1.1 869,122 - MMP_RS04550 0.76 +0.8 869,122 - MMP_RS04550 0.76 +0.7 869,122 - MMP_RS04550 0.76 +0.6 869,122 - MMP_RS04550 0.76 +2.0 869,122 - MMP_RS04550 0.76 +1.3 869,122 - MMP_RS04550 0.76 +1.9 869,123 + MMP_RS04550 0.76 +0.5 869,123 + MMP_RS04550 0.76 +1.7 869,123 + MMP_RS04550 0.76 +1.8 869,123 + MMP_RS04550 0.76 -0.0 869,133 - MMP_RS04550 0.76 +0.5 869,134 + MMP_RS04550 0.76 +0.3 869,134 + MMP_RS04550 0.76 +1.8 869,167 - MMP_RS04550 0.78 +1.8 869,168 + MMP_RS04550 0.78 +1.6 869,170 + MMP_RS04550 0.79 +0.8 869,223 - MMP_RS04550 0.82 +2.8 869,223 - MMP_RS04550 0.82 +1.4 869,223 - MMP_RS04550 0.82 +1.2 869,253 - MMP_RS04550 0.84 -1.2 869,274 - MMP_RS04550 0.85 +0.4 869,275 + MMP_RS04550 0.85 +0.7 869,320 + MMP_RS04550 0.88 +2.1 869,358 - +0.6 869,362 + +1.7 869,406 - +1.3 869,464 - +0.2 869,465 + +1.5 869,518 - -0.9 869,524 + -1.2 869,569 - -2.7 869,570 + -1.4 869,572 - -1.4 869,574 - -2.1 869,575 + -2.3 869,575 + -0.1 869,609 + -1.6 869,876 + -1.4 869,940 + -2.4 869,980 - -1.4 869,985 + -1.7 869,996 + -1.1 870,047 + +0.4 870,167 - -0.8 870,173 + -1.4 870,225 + -0.3 870,225 + -1.1 870,225 + -0.8 870,242 - -1.5 870,353 + -1.9 870,406 - -1.6 870,490 - -2.6
Or see this region's nucleotide sequence