Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04515

Experiment: Mc formate, casamino free, with 10mM L-Tyrosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04505 and MMP_RS04510 are separated by 15 nucleotidesMMP_RS04510 and MMP_RS04515 are separated by 13 nucleotidesMMP_RS04515 and MMP_RS04520 are separated by 443 nucleotidesMMP_RS04520 and MMP_RS04525 are separated by 31 nucleotides MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683 _RS04505 MMP_RS04510: MMP_RS04510 - ABC transporter permease subunit, at 858,699 to 859,532 _RS04510 MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715 _RS04515 MMP_RS04520: MMP_RS04520 - nucleoside deaminase, at 861,159 to 861,596 _RS04520 MMP_RS04525: MMP_RS04525 - D-2-hydroxyacid dehydrogenase, at 861,628 to 862,584 _RS04525 Position (kb) 859 860 861Strain fitness (log2 ratio) -2 -1 0 1at 858.546 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505at 858.697 kb on - strandat 858.759 kb on + strandat 858.794 kb on - strand, within MMP_RS04510at 858.795 kb on + strand, within MMP_RS04510at 858.816 kb on - strand, within MMP_RS04510at 858.946 kb on + strand, within MMP_RS04510at 859.115 kb on + strand, within MMP_RS04510at 859.115 kb on + strand, within MMP_RS04510at 859.141 kb on + strand, within MMP_RS04510at 859.170 kb on - strand, within MMP_RS04510at 859.171 kb on + strand, within MMP_RS04510at 859.191 kb on - strand, within MMP_RS04510at 859.292 kb on - strand, within MMP_RS04510at 859.295 kb on - strand, within MMP_RS04510at 859.353 kb on - strand, within MMP_RS04510at 859.354 kb on + strand, within MMP_RS04510at 859.386 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.432 kb on + strand, within MMP_RS04510at 859.435 kb on - strand, within MMP_RS04510at 859.436 kb on + strand, within MMP_RS04510at 859.467 kb on + strandat 859.467 kb on + strandat 859.517 kb on - strandat 859.548 kb on + strandat 859.548 kb on + strandat 859.557 kb on - strandat 859.563 kb on - strandat 859.587 kb on + strandat 859.613 kb on + strandat 859.673 kb on + strand, within MMP_RS04515at 859.689 kb on - strand, within MMP_RS04515at 859.690 kb on + strand, within MMP_RS04515at 859.690 kb on + strand, within MMP_RS04515at 859.758 kb on + strand, within MMP_RS04515at 859.777 kb on - strand, within MMP_RS04515at 859.777 kb on - strand, within MMP_RS04515at 859.778 kb on + strand, within MMP_RS04515at 859.781 kb on - strand, within MMP_RS04515at 859.782 kb on + strand, within MMP_RS04515at 859.799 kb on + strand, within MMP_RS04515at 859.839 kb on - strand, within MMP_RS04515at 859.839 kb on - strand, within MMP_RS04515at 859.842 kb on - strand, within MMP_RS04515at 859.843 kb on + strand, within MMP_RS04515at 860.047 kb on - strand, within MMP_RS04515at 860.153 kb on + strand, within MMP_RS04515at 860.167 kb on - strand, within MMP_RS04515at 860.391 kb on + strand, within MMP_RS04515at 860.401 kb on + strand, within MMP_RS04515at 860.491 kb on + strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.494 kb on + strand, within MMP_RS04515at 860.501 kb on + strand, within MMP_RS04515at 860.571 kb on - strand, within MMP_RS04515at 860.574 kb on - strand, within MMP_RS04515at 860.575 kb on + strand, within MMP_RS04515at 860.580 kb on - strand, within MMP_RS04515at 860.703 kb on - strandat 860.704 kb on + strandat 860.716 kb on + strandat 860.717 kb on - strandat 860.766 kb on - strandat 860.795 kb on - strandat 860.796 kb on + strandat 860.819 kb on + strandat 860.837 kb on + strandat 860.837 kb on + strandat 860.848 kb on - strandat 860.855 kb on - strandat 860.856 kb on + strandat 860.875 kb on - strandat 860.880 kb on - strandat 860.881 kb on + strandat 860.885 kb on + strandat 860.943 kb on + strandat 861.008 kb on + strandat 861.088 kb on - strandat 861.088 kb on - strandat 861.088 kb on - strandat 861.397 kb on - strand, within MMP_RS04520at 861.423 kb on - strand, within MMP_RS04520at 861.514 kb on - strand, within MMP_RS04520at 861.599 kb on - strandat 861.642 kb on + strandat 861.715 kb on - strandat 861.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Tyrosine
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858,546 + MMP_RS04505 0.84 +0.2
858,546 + MMP_RS04505 0.84 -1.2
858,697 - +0.0
858,759 + +0.1
858,794 - MMP_RS04510 0.11 +0.3
858,795 + MMP_RS04510 0.12 -0.8
858,816 - MMP_RS04510 0.14 -0.1
858,946 + MMP_RS04510 0.30 +0.2
859,115 + MMP_RS04510 0.50 +0.9
859,115 + MMP_RS04510 0.50 -0.1
859,141 + MMP_RS04510 0.53 -0.3
859,170 - MMP_RS04510 0.56 -1.9
859,171 + MMP_RS04510 0.57 +0.8
859,191 - MMP_RS04510 0.59 +0.0
859,292 - MMP_RS04510 0.71 +0.5
859,295 - MMP_RS04510 0.71 +0.2
859,353 - MMP_RS04510 0.78 +0.6
859,354 + MMP_RS04510 0.79 +0.2
859,386 - MMP_RS04510 0.82 -0.4
859,431 - MMP_RS04510 0.88 +0.3
859,431 - MMP_RS04510 0.88 -0.7
859,431 - MMP_RS04510 0.88 +0.6
859,432 + MMP_RS04510 0.88 +0.1
859,435 - MMP_RS04510 0.88 +0.5
859,436 + MMP_RS04510 0.88 -0.1
859,467 + +0.1
859,467 + +0.1
859,517 - +0.6
859,548 + +0.6
859,548 + +0.3
859,557 - -0.3
859,563 - -0.3
859,587 + -0.3
859,613 + -1.4
859,673 + MMP_RS04515 0.11 +0.3
859,689 - MMP_RS04515 0.12 -0.2
859,690 + MMP_RS04515 0.12 +0.1
859,690 + MMP_RS04515 0.12 +0.3
859,758 + MMP_RS04515 0.18 +1.0
859,777 - MMP_RS04515 0.20 -2.7
859,777 - MMP_RS04515 0.20 +0.4
859,778 + MMP_RS04515 0.20 -1.1
859,781 - MMP_RS04515 0.20 +1.3
859,782 + MMP_RS04515 0.20 +0.2
859,799 + MMP_RS04515 0.22 +0.3
859,839 - MMP_RS04515 0.25 -0.4
859,839 - MMP_RS04515 0.25 +1.0
859,842 - MMP_RS04515 0.25 +1.0
859,843 + MMP_RS04515 0.25 +0.8
860,047 - MMP_RS04515 0.43 +0.4
860,153 + MMP_RS04515 0.52 +0.5
860,167 - MMP_RS04515 0.53 +0.8
860,391 + MMP_RS04515 0.72 -0.0
860,401 + MMP_RS04515 0.73 -0.8
860,491 + MMP_RS04515 0.81 -0.4
860,493 - MMP_RS04515 0.81 +0.2
860,493 - MMP_RS04515 0.81 +0.2
860,493 - MMP_RS04515 0.81 +0.2
860,493 - MMP_RS04515 0.81 +0.4
860,493 - MMP_RS04515 0.81 +0.3
860,494 + MMP_RS04515 0.81 +0.0
860,501 + MMP_RS04515 0.82 +0.3
860,571 - MMP_RS04515 0.88 +1.5
860,574 - MMP_RS04515 0.88 -0.2
860,575 + MMP_RS04515 0.88 +0.7
860,580 - MMP_RS04515 0.88 +1.0
860,703 - +0.3
860,704 + -0.4
860,716 + +0.7
860,717 - +0.0
860,766 - +0.4
860,795 - -0.6
860,796 + -0.5
860,819 + +0.2
860,837 + -1.0
860,837 + -0.1
860,848 - -0.5
860,855 - +0.7
860,856 + +0.7
860,875 - +0.7
860,880 - +0.1
860,881 + +0.1
860,885 + +0.9
860,943 + -0.1
861,008 + +0.0
861,088 - +0.3
861,088 - -0.5
861,088 - -0.8
861,397 - MMP_RS04520 0.54 +1.2
861,423 - MMP_RS04520 0.60 -0.2
861,514 - MMP_RS04520 0.81 +0.4
861,599 - -0.1
861,642 + -0.4
861,715 - +0.7
861,715 - +0.5

Or see this region's nucleotide sequence