Experiment: Mc formate, casamino free, with 10mM L-Tyrosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00095 and MMP_RS00100 are separated by 13 nucleotides MMP_RS00100 and MMP_RS00105 are separated by 12 nucleotides MMP_RS00105 and MMP_RS00110 are separated by 14 nucleotides
MMP_RS00095: MMP_RS00095 - argininosuccinate lyase, at 22,602 to 24,047
_RS00095
MMP_RS00100: MMP_RS00100 - tRNA pseudouridine(13) synthase TruD, at 24,061 to 25,230
_RS00100
MMP_RS00105: MMP_RS00105 - hypothetical protein, at 25,243 to 26,046
_RS00105
MMP_RS00110: MMP_RS00110 - hypothetical protein, at 26,061 to 26,552
_RS00110
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.139 kb on + strand at 23.160 kb on - strand at 23.160 kb on - strand at 23.696 kb on - strand at 24.040 kb on - strand at 24.045 kb on - strand at 24.091 kb on - strand at 24.222 kb on + strand, within MMP_RS00100 at 24.425 kb on - strand, within MMP_RS00100 at 24.425 kb on - strand, within MMP_RS00100 at 24.425 kb on - strand, within MMP_RS00100 at 24.425 kb on - strand, within MMP_RS00100 at 24.426 kb on + strand, within MMP_RS00100 at 24.426 kb on + strand, within MMP_RS00100 at 24.426 kb on + strand, within MMP_RS00100 at 24.426 kb on + strand, within MMP_RS00100 at 24.426 kb on + strand, within MMP_RS00100 at 24.426 kb on + strand, within MMP_RS00100 at 24.427 kb on - strand, within MMP_RS00100 at 24.428 kb on + strand, within MMP_RS00100 at 24.458 kb on + strand, within MMP_RS00100 at 24.488 kb on - strand, within MMP_RS00100 at 24.489 kb on + strand, within MMP_RS00100 at 24.529 kb on + strand, within MMP_RS00100 at 24.532 kb on - strand, within MMP_RS00100 at 24.533 kb on + strand, within MMP_RS00100 at 24.580 kb on - strand, within MMP_RS00100 at 24.581 kb on + strand, within MMP_RS00100 at 24.600 kb on - strand, within MMP_RS00100 at 24.608 kb on + strand, within MMP_RS00100 at 24.626 kb on - strand, within MMP_RS00100 at 24.973 kb on + strand, within MMP_RS00100 at 25.183 kb on - strand at 25.196 kb on + strand at 25.239 kb on - strand at 25.240 kb on + strand at 25.265 kb on + strand at 25.274 kb on + strand at 25.278 kb on - strand at 25.279 kb on + strand at 25.408 kb on + strand, within MMP_RS00105 at 25.519 kb on + strand, within MMP_RS00105 at 25.557 kb on + strand, within MMP_RS00105 at 25.741 kb on + strand, within MMP_RS00105 at 25.784 kb on + strand, within MMP_RS00105 at 25.789 kb on - strand, within MMP_RS00105 at 25.789 kb on - strand, within MMP_RS00105 at 25.789 kb on - strand, within MMP_RS00105 at 25.793 kb on + strand, within MMP_RS00105 at 25.867 kb on + strand, within MMP_RS00105 at 25.899 kb on - strand, within MMP_RS00105 at 25.904 kb on - strand, within MMP_RS00105 at 25.905 kb on + strand, within MMP_RS00105 at 25.905 kb on + strand, within MMP_RS00105 at 26.026 kb on - strand at 26.028 kb on - strand at 26.049 kb on - strand at 26.099 kb on - strand at 26.109 kb on - strand at 26.110 kb on + strand at 26.122 kb on - strand, within MMP_RS00110 at 26.123 kb on + strand, within MMP_RS00110
Per-strain Table
Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Tyrosine remove 23,139 + -1.5 23,160 - +0.1 23,160 - -2.8 23,696 - -0.9 24,040 - +0.2 24,045 - +0.3 24,091 - +0.9 24,222 + MMP_RS00100 0.14 +0.4 24,425 - MMP_RS00100 0.31 -1.7 24,425 - MMP_RS00100 0.31 +0.1 24,425 - MMP_RS00100 0.31 -0.0 24,425 - MMP_RS00100 0.31 -0.3 24,426 + MMP_RS00100 0.31 +0.1 24,426 + MMP_RS00100 0.31 -0.0 24,426 + MMP_RS00100 0.31 +1.0 24,426 + MMP_RS00100 0.31 +1.3 24,426 + MMP_RS00100 0.31 +0.2 24,426 + MMP_RS00100 0.31 +0.0 24,427 - MMP_RS00100 0.31 +0.6 24,428 + MMP_RS00100 0.31 +0.4 24,458 + MMP_RS00100 0.34 +0.0 24,488 - MMP_RS00100 0.36 +0.3 24,489 + MMP_RS00100 0.37 -0.1 24,529 + MMP_RS00100 0.40 +0.6 24,532 - MMP_RS00100 0.40 +0.3 24,533 + MMP_RS00100 0.40 +0.3 24,580 - MMP_RS00100 0.44 +0.9 24,581 + MMP_RS00100 0.44 +0.7 24,600 - MMP_RS00100 0.46 +1.3 24,608 + MMP_RS00100 0.47 +0.4 24,626 - MMP_RS00100 0.48 +0.7 24,973 + MMP_RS00100 0.78 +0.6 25,183 - -1.8 25,196 + -0.0 25,239 - +0.0 25,240 + +0.0 25,265 + +0.2 25,274 + +0.1 25,278 - +0.8 25,279 + +0.1 25,408 + MMP_RS00105 0.21 +0.2 25,519 + MMP_RS00105 0.34 +0.3 25,557 + MMP_RS00105 0.39 +0.2 25,741 + MMP_RS00105 0.62 +0.1 25,784 + MMP_RS00105 0.67 -0.5 25,789 - MMP_RS00105 0.68 -0.3 25,789 - MMP_RS00105 0.68 -0.1 25,789 - MMP_RS00105 0.68 +0.3 25,793 + MMP_RS00105 0.68 +0.5 25,867 + MMP_RS00105 0.78 -0.1 25,899 - MMP_RS00105 0.82 +0.3 25,904 - MMP_RS00105 0.82 +0.1 25,905 + MMP_RS00105 0.82 +0.6 25,905 + MMP_RS00105 0.82 -0.2 26,026 - -0.2 26,028 - -1.1 26,049 - -0.2 26,099 - +0.1 26,109 - -1.5 26,110 + +1.5 26,122 - MMP_RS00110 0.12 -2.0 26,123 + MMP_RS00110 0.13 -1.6
Or see this region's nucleotide sequence