Experiment: m.b. syringaldehyde 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1942 and HP15_1943 overlap by 11 nucleotides HP15_1943 and HP15_1944 are separated by 131 nucleotides HP15_1944 and HP15_1945 are separated by 102 nucleotides
HP15_1942: HP15_1942 - CDP-alcohol phosphatidyltransferase-like protein, at 2,061,658 to 2,062,359
_1942
HP15_1943: HP15_1943 - lipid/polyisoprenoid-binding, YceI-like protein, at 2,062,349 to 2,062,963
_1943
HP15_1944: HP15_1944 - conserved hypothetical protein, secreted, at 2,063,095 to 2,064,165
_1944
HP15_1945: HP15_1945 - conserved hypothetical protein, secreted, at 2,064,268 to 2,065,356
_1945
Position (kb)
2063
2064
2065 Strain fitness (log2 ratio)
-1
0
1 at 2062.096 kb on + strand, within HP15_1942 at 2062.211 kb on + strand, within HP15_1942 at 2062.211 kb on + strand, within HP15_1942 at 2062.217 kb on - strand, within HP15_1942 at 2062.322 kb on + strand at 2062.375 kb on - strand at 2062.421 kb on + strand, within HP15_1943 at 2062.569 kb on + strand, within HP15_1943 at 2062.585 kb on + strand, within HP15_1943 at 2062.607 kb on - strand, within HP15_1943 at 2062.609 kb on - strand, within HP15_1943 at 2062.759 kb on - strand, within HP15_1943 at 2062.798 kb on + strand, within HP15_1943 at 2063.078 kb on + strand at 2063.135 kb on - strand at 2063.140 kb on - strand at 2063.238 kb on - strand, within HP15_1944 at 2063.309 kb on + strand, within HP15_1944 at 2063.358 kb on - strand, within HP15_1944 at 2063.367 kb on + strand, within HP15_1944 at 2063.389 kb on - strand, within HP15_1944 at 2063.415 kb on + strand, within HP15_1944 at 2063.525 kb on + strand, within HP15_1944 at 2063.525 kb on + strand, within HP15_1944 at 2063.525 kb on + strand, within HP15_1944 at 2063.565 kb on - strand, within HP15_1944 at 2063.598 kb on - strand, within HP15_1944 at 2063.717 kb on + strand, within HP15_1944 at 2063.768 kb on - strand, within HP15_1944 at 2063.771 kb on + strand, within HP15_1944 at 2063.789 kb on - strand, within HP15_1944 at 2063.803 kb on + strand, within HP15_1944 at 2063.839 kb on + strand, within HP15_1944 at 2063.847 kb on - strand, within HP15_1944 at 2063.850 kb on + strand, within HP15_1944 at 2063.850 kb on + strand, within HP15_1944 at 2063.953 kb on - strand, within HP15_1944 at 2064.049 kb on + strand, within HP15_1944 at 2064.063 kb on - strand at 2064.294 kb on + strand at 2064.354 kb on - strand at 2064.371 kb on + strand at 2064.456 kb on + strand, within HP15_1945 at 2064.545 kb on + strand, within HP15_1945 at 2064.545 kb on + strand, within HP15_1945 at 2064.559 kb on + strand, within HP15_1945 at 2064.577 kb on + strand, within HP15_1945 at 2064.577 kb on + strand, within HP15_1945 at 2064.744 kb on - strand, within HP15_1945 at 2064.744 kb on - strand, within HP15_1945 at 2064.746 kb on + strand, within HP15_1945 at 2064.754 kb on - strand, within HP15_1945 at 2064.758 kb on + strand, within HP15_1945 at 2064.892 kb on - strand, within HP15_1945 at 2064.971 kb on - strand, within HP15_1945 at 2065.115 kb on + strand, within HP15_1945 at 2065.123 kb on - strand, within HP15_1945 at 2065.160 kb on + strand, within HP15_1945 at 2065.160 kb on + strand, within HP15_1945
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM remove 2,062,096 + HP15_1942 0.62 +0.3 2,062,211 + HP15_1942 0.79 +0.1 2,062,211 + HP15_1942 0.79 -0.1 2,062,217 - HP15_1942 0.80 +0.6 2,062,322 + +1.0 2,062,375 - -1.0 2,062,421 + HP15_1943 0.12 -0.8 2,062,569 + HP15_1943 0.36 +0.1 2,062,585 + HP15_1943 0.38 +1.3 2,062,607 - HP15_1943 0.42 -0.0 2,062,609 - HP15_1943 0.42 +0.1 2,062,759 - HP15_1943 0.67 -0.8 2,062,798 + HP15_1943 0.73 +0.3 2,063,078 + -0.9 2,063,135 - -1.4 2,063,140 - -0.8 2,063,238 - HP15_1944 0.13 -0.4 2,063,309 + HP15_1944 0.20 +0.9 2,063,358 - HP15_1944 0.25 -1.0 2,063,367 + HP15_1944 0.25 -0.3 2,063,389 - HP15_1944 0.27 -0.4 2,063,415 + HP15_1944 0.30 -0.3 2,063,525 + HP15_1944 0.40 -0.6 2,063,525 + HP15_1944 0.40 +0.1 2,063,525 + HP15_1944 0.40 -0.3 2,063,565 - HP15_1944 0.44 -0.4 2,063,598 - HP15_1944 0.47 -1.4 2,063,717 + HP15_1944 0.58 -0.4 2,063,768 - HP15_1944 0.63 -0.0 2,063,771 + HP15_1944 0.63 -0.5 2,063,789 - HP15_1944 0.65 -1.0 2,063,803 + HP15_1944 0.66 +0.2 2,063,839 + HP15_1944 0.69 -0.1 2,063,847 - HP15_1944 0.70 -0.1 2,063,850 + HP15_1944 0.70 +0.3 2,063,850 + HP15_1944 0.70 -0.4 2,063,953 - HP15_1944 0.80 -0.3 2,064,049 + HP15_1944 0.89 -0.4 2,064,063 - +0.1 2,064,294 + +0.4 2,064,354 - +0.1 2,064,371 + +0.0 2,064,456 + HP15_1945 0.17 +0.4 2,064,545 + HP15_1945 0.25 +0.2 2,064,545 + HP15_1945 0.25 -0.3 2,064,559 + HP15_1945 0.27 -1.0 2,064,577 + HP15_1945 0.28 -0.2 2,064,577 + HP15_1945 0.28 -0.3 2,064,744 - HP15_1945 0.44 +0.9 2,064,744 - HP15_1945 0.44 +1.6 2,064,746 + HP15_1945 0.44 +0.1 2,064,754 - HP15_1945 0.45 +0.2 2,064,758 + HP15_1945 0.45 -0.3 2,064,892 - HP15_1945 0.57 +0.2 2,064,971 - HP15_1945 0.65 +0.6 2,065,115 + HP15_1945 0.78 +0.5 2,065,123 - HP15_1945 0.79 -0.5 2,065,160 + HP15_1945 0.82 +0.1 2,065,160 + HP15_1945 0.82 -0.3
Or see this region's nucleotide sequence