Strain Fitness in Marinobacter adhaerens HP15 around HP15_1944

Experiment: m.b. syringaldehyde 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1942 and HP15_1943 overlap by 11 nucleotidesHP15_1943 and HP15_1944 are separated by 131 nucleotidesHP15_1944 and HP15_1945 are separated by 102 nucleotides HP15_1942: HP15_1942 - CDP-alcohol phosphatidyltransferase-like protein, at 2,061,658 to 2,062,359 _1942 HP15_1943: HP15_1943 - lipid/polyisoprenoid-binding, YceI-like protein, at 2,062,349 to 2,062,963 _1943 HP15_1944: HP15_1944 - conserved hypothetical protein, secreted, at 2,063,095 to 2,064,165 _1944 HP15_1945: HP15_1945 - conserved hypothetical protein, secreted, at 2,064,268 to 2,065,356 _1945 Position (kb) 2063 2064 2065Strain fitness (log2 ratio) -1 0 1at 2062.096 kb on + strand, within HP15_1942at 2062.211 kb on + strand, within HP15_1942at 2062.211 kb on + strand, within HP15_1942at 2062.217 kb on - strand, within HP15_1942at 2062.322 kb on + strandat 2062.375 kb on - strandat 2062.421 kb on + strand, within HP15_1943at 2062.569 kb on + strand, within HP15_1943at 2062.585 kb on + strand, within HP15_1943at 2062.607 kb on - strand, within HP15_1943at 2062.609 kb on - strand, within HP15_1943at 2062.759 kb on - strand, within HP15_1943at 2062.798 kb on + strand, within HP15_1943at 2063.078 kb on + strandat 2063.135 kb on - strandat 2063.140 kb on - strandat 2063.238 kb on - strand, within HP15_1944at 2063.309 kb on + strand, within HP15_1944at 2063.358 kb on - strand, within HP15_1944at 2063.367 kb on + strand, within HP15_1944at 2063.389 kb on - strand, within HP15_1944at 2063.415 kb on + strand, within HP15_1944at 2063.525 kb on + strand, within HP15_1944at 2063.525 kb on + strand, within HP15_1944at 2063.525 kb on + strand, within HP15_1944at 2063.565 kb on - strand, within HP15_1944at 2063.598 kb on - strand, within HP15_1944at 2063.717 kb on + strand, within HP15_1944at 2063.768 kb on - strand, within HP15_1944at 2063.771 kb on + strand, within HP15_1944at 2063.789 kb on - strand, within HP15_1944at 2063.803 kb on + strand, within HP15_1944at 2063.839 kb on + strand, within HP15_1944at 2063.847 kb on - strand, within HP15_1944at 2063.850 kb on + strand, within HP15_1944at 2063.850 kb on + strand, within HP15_1944at 2063.953 kb on - strand, within HP15_1944at 2064.049 kb on + strand, within HP15_1944at 2064.063 kb on - strandat 2064.294 kb on + strandat 2064.354 kb on - strandat 2064.371 kb on + strandat 2064.456 kb on + strand, within HP15_1945at 2064.545 kb on + strand, within HP15_1945at 2064.545 kb on + strand, within HP15_1945at 2064.559 kb on + strand, within HP15_1945at 2064.577 kb on + strand, within HP15_1945at 2064.577 kb on + strand, within HP15_1945at 2064.744 kb on - strand, within HP15_1945at 2064.744 kb on - strand, within HP15_1945at 2064.746 kb on + strand, within HP15_1945at 2064.754 kb on - strand, within HP15_1945at 2064.758 kb on + strand, within HP15_1945at 2064.892 kb on - strand, within HP15_1945at 2064.971 kb on - strand, within HP15_1945at 2065.115 kb on + strand, within HP15_1945at 2065.123 kb on - strand, within HP15_1945at 2065.160 kb on + strand, within HP15_1945at 2065.160 kb on + strand, within HP15_1945

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1.25 mM
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2,062,096 + HP15_1942 0.62 +0.3
2,062,211 + HP15_1942 0.79 +0.1
2,062,211 + HP15_1942 0.79 -0.1
2,062,217 - HP15_1942 0.80 +0.6
2,062,322 + +1.0
2,062,375 - -1.0
2,062,421 + HP15_1943 0.12 -0.8
2,062,569 + HP15_1943 0.36 +0.1
2,062,585 + HP15_1943 0.38 +1.3
2,062,607 - HP15_1943 0.42 -0.0
2,062,609 - HP15_1943 0.42 +0.1
2,062,759 - HP15_1943 0.67 -0.8
2,062,798 + HP15_1943 0.73 +0.3
2,063,078 + -0.9
2,063,135 - -1.4
2,063,140 - -0.8
2,063,238 - HP15_1944 0.13 -0.4
2,063,309 + HP15_1944 0.20 +0.9
2,063,358 - HP15_1944 0.25 -1.0
2,063,367 + HP15_1944 0.25 -0.3
2,063,389 - HP15_1944 0.27 -0.4
2,063,415 + HP15_1944 0.30 -0.3
2,063,525 + HP15_1944 0.40 -0.6
2,063,525 + HP15_1944 0.40 +0.1
2,063,525 + HP15_1944 0.40 -0.3
2,063,565 - HP15_1944 0.44 -0.4
2,063,598 - HP15_1944 0.47 -1.4
2,063,717 + HP15_1944 0.58 -0.4
2,063,768 - HP15_1944 0.63 -0.0
2,063,771 + HP15_1944 0.63 -0.5
2,063,789 - HP15_1944 0.65 -1.0
2,063,803 + HP15_1944 0.66 +0.2
2,063,839 + HP15_1944 0.69 -0.1
2,063,847 - HP15_1944 0.70 -0.1
2,063,850 + HP15_1944 0.70 +0.3
2,063,850 + HP15_1944 0.70 -0.4
2,063,953 - HP15_1944 0.80 -0.3
2,064,049 + HP15_1944 0.89 -0.4
2,064,063 - +0.1
2,064,294 + +0.4
2,064,354 - +0.1
2,064,371 + +0.0
2,064,456 + HP15_1945 0.17 +0.4
2,064,545 + HP15_1945 0.25 +0.2
2,064,545 + HP15_1945 0.25 -0.3
2,064,559 + HP15_1945 0.27 -1.0
2,064,577 + HP15_1945 0.28 -0.2
2,064,577 + HP15_1945 0.28 -0.3
2,064,744 - HP15_1945 0.44 +0.9
2,064,744 - HP15_1945 0.44 +1.6
2,064,746 + HP15_1945 0.44 +0.1
2,064,754 - HP15_1945 0.45 +0.2
2,064,758 + HP15_1945 0.45 -0.3
2,064,892 - HP15_1945 0.57 +0.2
2,064,971 - HP15_1945 0.65 +0.6
2,065,115 + HP15_1945 0.78 +0.5
2,065,123 - HP15_1945 0.79 -0.5
2,065,160 + HP15_1945 0.82 +0.1
2,065,160 + HP15_1945 0.82 -0.3

Or see this region's nucleotide sequence