Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02470

Experiment: PYE with CHIR-090 2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 2 ug/mL
2,611,699	-		CCNA_02468	0.14	+0.3
2,611,714	-		CCNA_02468	0.19	+0.1
2,611,714	-		CCNA_02468	0.19	+0.2
2,611,756	+		CCNA_02468	0.36	-1.3
2,611,798	+		CCNA_02468	0.52	-2.0
2,611,806	-		CCNA_02468	0.55	+0.9
2,611,806	-		CCNA_02468	0.55	+0.0
2,611,855	-		CCNA_02468	0.74	-1.1
2,611,884	+		CCNA_02468	0.85	-0.4
2,611,922	+				+0.2
2,612,001	+				+0.6
2,612,001	+				+0.8
2,612,002	+				-1.7
2,612,004	-				-1.6
2,612,014	+				+0.5
2,612,014	+		CCNA_02469	0.11	-0.2
2,612,015	+		CCNA_02469	0.11	-1.5
2,612,023	-		CCNA_02469	0.12	+0.1
2,612,023	-		CCNA_02469	0.12	+0.2
2,612,023	-		CCNA_02469	0.12	+0.5
2,612,023	-		CCNA_02469	0.12	-1.4
2,612,035	+		CCNA_02469	0.14	-0.7
2,612,056	-		CCNA_02469	0.18	-0.2
2,612,059	+		CCNA_02469	0.18	-0.4
2,612,107	+		CCNA_02469	0.26	+0.8
2,612,112	+		CCNA_02469	0.27	-1.0
2,612,115	-		CCNA_02469	0.28	-1.8
2,612,115	-		CCNA_02469	0.28	-0.6
2,612,120	-		CCNA_02469	0.28	-2.1
2,612,202	-		CCNA_02469	0.42	-0.7
2,612,226	-		CCNA_02469	0.46	+0.8
2,612,237	-		CCNA_02469	0.48	-2.6
2,612,260	-		CCNA_02469	0.52	-0.3
2,612,276	-		CCNA_02469	0.55	-0.3
2,612,297	+		CCNA_02469	0.58	-2.5
2,612,342	-		CCNA_02469	0.66	-0.4
2,612,394	-		CCNA_02469	0.74	-1.5
2,612,404	-		CCNA_02469	0.76	-3.0
2,612,406	+		CCNA_02469	0.76	-0.7
2,612,414	-		CCNA_02469	0.78	-2.1
2,612,414	-		CCNA_02469	0.78	-0.8
2,612,426	+		CCNA_02469	0.80	-0.4
2,612,439	-		CCNA_02469	0.82	-0.9
2,612,474	+		CCNA_02469	0.88	-0.6
2,612,489	+				-0.8
2,612,511	-				-0.9
2,612,522	+				-1.6
2,612,530	-				-0.2
2,612,540	+				-2.8
2,612,543	+				+0.2
2,612,545	+				+0.2
2,612,545	+				-1.6
2,612,549	-				+1.2
2,612,550	+				-0.1
2,612,553	-				-1.1
2,612,650	+				-1.7
2,612,651	+				-0.8
2,612,659	-				-1.3
2,612,674	-				-1.4
2,612,676	+				-1.3
2,612,686	+				-3.0
2,612,686	+				+0.3
2,612,694	-				+0.3
2,612,706	+				-2.4
2,612,706	+				+0.4
2,612,706	+				-0.8
2,612,718	+				-1.2
2,612,719	+				+0.0
2,612,748	+				+0.8
2,612,767	+				-3.0
2,612,808	-		CCNA_02470	0.13	-0.9
2,612,808	-		CCNA_02470	0.13	-0.8
2,612,815	-		CCNA_02470	0.14	+0.2
2,612,823	+		CCNA_02470	0.14	+1.8
2,612,854	-		CCNA_02470	0.18	-1.9
2,612,863	+		CCNA_02470	0.18	+0.0
2,612,876	-		CCNA_02470	0.20	-0.7
2,612,916	+		CCNA_02470	0.24	-0.5
2,612,916	-		CCNA_02470	0.24	-0.9
2,612,917	+		CCNA_02470	0.24	-0.1
2,612,924	-		CCNA_02470	0.24	-1.1
2,612,959	+		CCNA_02470	0.28	-0.9
2,612,963	+		CCNA_02470	0.28	+0.5
2,612,977	+		CCNA_02470	0.30	-1.9
2,612,985	-		CCNA_02470	0.31	+0.1
2,612,985	-		CCNA_02470	0.31	+0.4
2,612,998	+		CCNA_02470	0.32	-0.8
2,613,013	+		CCNA_02470	0.33	-0.6
2,613,021	-		CCNA_02470	0.34	-1.2
2,613,033	+		CCNA_02470	0.35	+0.4
2,613,041	-		CCNA_02470	0.36	-0.6
2,613,058	+		CCNA_02470	0.38	-1.7
2,613,066	-		CCNA_02470	0.39	-1.0
2,613,076	+		CCNA_02470	0.40	+0.4
2,613,076	+		CCNA_02470	0.40	-0.2
2,613,076	+		CCNA_02470	0.40	-0.9
2,613,081	+		CCNA_02470	0.40	-2.1
2,613,081	+		CCNA_02470	0.40	-2.5
2,613,081	+		CCNA_02470	0.40	-1.9
2,613,081	+		CCNA_02470	0.40	-1.6
2,613,084	-		CCNA_02470	0.40	-0.4
2,613,089	-		CCNA_02470	0.41	-1.2
2,613,089	-		CCNA_02470	0.41	-1.1
2,613,142	-				+0.7
2,613,179	-				-0.2
2,613,181	+				-1.9
2,613,257	+				-0.3
2,613,326	+				+0.7
2,613,341	+				-0.9
2,613,341	+				-0.3
2,613,344	-				+0.1
2,613,346	+				-0.3
2,613,350	+				-1.5
2,613,365	+				-0.5
2,613,368	-				-1.3
2,613,375	+				-0.4
2,613,392	-				+2.3
2,613,392	-				+3.8
2,613,403	-				-0.2
2,613,420	-				-0.3
2,613,438	+				-0.4
2,613,492	+				+0.0
2,613,492	+				+1.1
2,613,516	-				-0.1
2,613,540	-				-0.9
2,613,545	+				+0.2
2,613,556	+				-0.8
2,613,568	-				-0.5
2,613,575	+				-2.0
2,613,575	+				+1.8
2,613,575	+				-0.7
2,613,589	+				+0.3
2,613,597	-				-1.1
2,613,613	+				+0.3
2,613,613	+				-0.5
2,613,613	+				-0.4
2,613,621	-				+0.3
2,613,650	-				-1.4
2,613,676	+				+0.5
2,613,716	+				-0.3
2,613,734	+				-0.5
2,613,763	-				+1.6
2,613,802	+		CCNA_02471	0.11	+0.1
2,613,817	+		CCNA_02471	0.12	-0.5
2,613,831	+		CCNA_02471	0.13	+0.1
2,613,868	+		CCNA_02471	0.16	+1.4
2,613,876	-		CCNA_02471	0.17	+1.5
2,613,876	-		CCNA_02471	0.17	-2.9
2,613,914	+		CCNA_02471	0.20	-0.5
2,613,943	+		CCNA_02471	0.22	+0.2
2,613,948	+		CCNA_02471	0.22	+1.2
2,613,952	+		CCNA_02471	0.23	-1.3
2,613,999	+		CCNA_02471	0.26	+1.2
2,614,000	-		CCNA_02471	0.26	-1.6
2,614,007	-		CCNA_02471	0.27	-2.1
2,614,022	+		CCNA_02471	0.28	+2.2
2,614,073	+		CCNA_02471	0.32	-0.9
2,614,134	+		CCNA_02471	0.37	+0.3
2,614,142	-		CCNA_02471	0.38	+0.7
2,614,167	-		CCNA_02471	0.40	+1.4
2,614,167	-		CCNA_02471	0.40	-0.9
2,614,252	+		CCNA_02471	0.46	-0.3
2,614,272	-		CCNA_02471	0.48	-0.4
2,614,300	+		CCNA_02471	0.50	+0.0
2,614,300	+		CCNA_02471	0.50	+0.3
2,614,337	+		CCNA_02471	0.53	+0.4
2,614,337	+		CCNA_02471	0.53	-1.0
2,614,402	+		CCNA_02471	0.58	+1.1
2,614,402	+		CCNA_02471	0.58	+1.5
2,614,410	-		CCNA_02471	0.59	+0.7
2,614,435	+				+2.8
2,614,435	+		CCNA_02471	0.61	+0.2
2,614,435	+		CCNA_02471	0.61	+0.1
2,614,436	-		CCNA_02471	0.61	+1.4
2,614,443	-		CCNA_02471	0.61	+0.3
2,614,443	-		CCNA_02471	0.61	-1.0
2,614,458	-		CCNA_02471	0.63	+0.0
2,614,458	-		CCNA_02471	0.63	+0.2
2,614,458	-		CCNA_02471	0.63	-0.2
2,614,465	+		CCNA_02471	0.63	-0.2
2,614,582	+		CCNA_02471	0.72	+0.1
2,614,590	-		CCNA_02471	0.73	-0.4
2,614,608	+		CCNA_02471	0.74	-0.4
2,614,616	-		CCNA_02471	0.75	-1.7
2,614,663	+		CCNA_02471	0.79	-1.3
2,614,673	+		CCNA_02471	0.80	-0.4
2,614,681	-		CCNA_02471	0.80	-1.3