Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27760 and BWI76_RS27765 are separated by 118 nucleotides BWI76_RS27765 and BWI76_RS27770 are separated by 212 nucleotides BWI76_RS27770 and BWI76_RS27775 overlap by 17 nucleotides BWI76_RS27775 and BWI76_RS27780 are separated by 84 nucleotides
BWI76_RS27760: BWI76_RS27760 - lactam utilization protein LamB, at 5,759,854 to 5,761,233
_RS27760
BWI76_RS27765: BWI76_RS27765 - MFS transporter, at 5,761,352 to 5,762,533
_RS27765
BWI76_RS27770: BWI76_RS27770 - hypothetical protein, at 5,762,746 to 5,763,105
_RS27770
BWI76_RS27775: BWI76_RS27775 - transcriptional regulator, at 5,763,089 to 5,763,412
_RS27775
BWI76_RS27780: BWI76_RS27780 - hypothetical protein, at 5,763,497 to 5,763,949
_RS27780
Position (kb) 5761
5762
5763 Strain fitness (log2 ratio) -1
0
1 at 5760.832 kb on + strand, within BWI76_RS27760 at 5760.972 kb on + strand, within BWI76_RS27760 at 5761.393 kb on + strand at 5761.442 kb on - strand at 5761.472 kb on + strand, within BWI76_RS27765 at 5761.473 kb on + strand, within BWI76_RS27765 at 5761.538 kb on - strand, within BWI76_RS27765 at 5761.557 kb on - strand, within BWI76_RS27765 at 5761.711 kb on + strand, within BWI76_RS27765 at 5761.711 kb on + strand, within BWI76_RS27765 at 5761.719 kb on - strand, within BWI76_RS27765 at 5761.719 kb on - strand, within BWI76_RS27765 at 5761.770 kb on - strand, within BWI76_RS27765 at 5761.810 kb on - strand, within BWI76_RS27765 at 5761.882 kb on + strand, within BWI76_RS27765 at 5762.050 kb on - strand, within BWI76_RS27765 at 5762.100 kb on + strand, within BWI76_RS27765 at 5762.171 kb on + strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765 at 5762.400 kb on + strand, within BWI76_RS27765 at 5762.536 kb on - strand at 5762.536 kb on - strand at 5762.784 kb on - strand, within BWI76_RS27770 at 5762.856 kb on - strand, within BWI76_RS27770 at 5762.863 kb on - strand, within BWI76_RS27770 at 5762.932 kb on + strand, within BWI76_RS27770 at 5762.932 kb on - strand, within BWI76_RS27770 at 5762.959 kb on + strand, within BWI76_RS27770 at 5763.089 kb on - strand at 5763.131 kb on + strand, within BWI76_RS27775 at 5763.401 kb on - strand at 5763.417 kb on + strand at 5763.417 kb on + strand at 5763.453 kb on - strand at 5763.471 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 5,760,832 + BWI76_RS27760 0.71 -0.6 5,760,972 + BWI76_RS27760 0.81 +0.2 5,761,393 + -0.4 5,761,442 - +0.4 5,761,472 + BWI76_RS27765 0.10 -0.2 5,761,473 + BWI76_RS27765 0.10 +0.3 5,761,538 - BWI76_RS27765 0.16 -1.1 5,761,557 - BWI76_RS27765 0.17 -0.1 5,761,711 + BWI76_RS27765 0.30 -0.2 5,761,711 + BWI76_RS27765 0.30 -1.1 5,761,719 - BWI76_RS27765 0.31 -1.4 5,761,719 - BWI76_RS27765 0.31 -0.7 5,761,770 - BWI76_RS27765 0.35 -0.6 5,761,810 - BWI76_RS27765 0.39 -0.1 5,761,882 + BWI76_RS27765 0.45 -0.9 5,762,050 - BWI76_RS27765 0.59 -0.5 5,762,100 + BWI76_RS27765 0.63 -0.1 5,762,171 + BWI76_RS27765 0.69 +0.0 5,762,178 - BWI76_RS27765 0.70 -0.9 5,762,178 - BWI76_RS27765 0.70 -0.1 5,762,184 - BWI76_RS27765 0.70 -1.1 5,762,184 - BWI76_RS27765 0.70 -0.1 5,762,400 + BWI76_RS27765 0.89 -0.6 5,762,536 - +1.1 5,762,536 - -0.3 5,762,784 - BWI76_RS27770 0.11 -0.1 5,762,856 - BWI76_RS27770 0.31 -1.5 5,762,863 - BWI76_RS27770 0.33 -0.4 5,762,932 + BWI76_RS27770 0.52 +0.0 5,762,932 - BWI76_RS27770 0.52 -0.2 5,762,959 + BWI76_RS27770 0.59 -0.0 5,763,089 - +0.2 5,763,131 + BWI76_RS27775 0.13 +0.3 5,763,401 - -1.7 5,763,417 + -0.6 5,763,417 + +0.2 5,763,453 - +0.9 5,763,471 + -0.1
Or see this region's nucleotide sequence