Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17500 and BWI76_RS17505 are separated by 62 nucleotides BWI76_RS17505 and BWI76_RS17510 are separated by 63 nucleotides
BWI76_RS17500: BWI76_RS17500 - knotted carbamoyltransferase YgeW, at 3,628,648 to 3,629,835
_RS17500
BWI76_RS17505: BWI76_RS17505 - PLP-dependent lyase/thiolase, at 3,629,898 to 3,631,097
_RS17505
BWI76_RS17510: BWI76_RS17510 - selenium metabolism hydrolase, at 3,631,161 to 3,632,372
_RS17510
Position (kb)
3629
3630
3631
3632 Strain fitness (log2 ratio)
-1
0
1 at 3629.083 kb on - strand, within BWI76_RS17500 at 3629.302 kb on + strand, within BWI76_RS17500 at 3629.330 kb on + strand, within BWI76_RS17500 at 3629.350 kb on - strand, within BWI76_RS17500 at 3629.579 kb on + strand, within BWI76_RS17500 at 3629.813 kb on - strand at 3629.858 kb on + strand at 3629.868 kb on - strand at 3629.868 kb on - strand at 3630.207 kb on - strand, within BWI76_RS17505 at 3630.556 kb on - strand, within BWI76_RS17505 at 3630.686 kb on + strand, within BWI76_RS17505 at 3630.694 kb on + strand, within BWI76_RS17505 at 3630.739 kb on - strand, within BWI76_RS17505 at 3630.775 kb on - strand, within BWI76_RS17505 at 3630.894 kb on - strand, within BWI76_RS17505 at 3630.894 kb on - strand, within BWI76_RS17505 at 3631.040 kb on - strand at 3631.042 kb on + strand at 3631.146 kb on - strand at 3631.498 kb on + strand, within BWI76_RS17510 at 3631.631 kb on + strand, within BWI76_RS17510 at 3632.060 kb on + strand, within BWI76_RS17510 at 3632.070 kb on + strand, within BWI76_RS17510 at 3632.070 kb on + strand, within BWI76_RS17510 at 3632.078 kb on - strand, within BWI76_RS17510
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 3,629,083 - BWI76_RS17500 0.37 +0.2 3,629,302 + BWI76_RS17500 0.55 +0.1 3,629,330 + BWI76_RS17500 0.57 -0.3 3,629,350 - BWI76_RS17500 0.59 +0.2 3,629,579 + BWI76_RS17500 0.78 -0.2 3,629,813 - -0.1 3,629,858 + +0.8 3,629,868 - +0.2 3,629,868 - -0.3 3,630,207 - BWI76_RS17505 0.26 -0.1 3,630,556 - BWI76_RS17505 0.55 +0.9 3,630,686 + BWI76_RS17505 0.66 +0.1 3,630,694 + BWI76_RS17505 0.66 +0.2 3,630,739 - BWI76_RS17505 0.70 +0.3 3,630,775 - BWI76_RS17505 0.73 -0.0 3,630,894 - BWI76_RS17505 0.83 -0.1 3,630,894 - BWI76_RS17505 0.83 -0.2 3,631,040 - +1.1 3,631,042 + -1.0 3,631,146 - -0.3 3,631,498 + BWI76_RS17510 0.28 +0.8 3,631,631 + BWI76_RS17510 0.39 -0.7 3,632,060 + BWI76_RS17510 0.74 -0.6 3,632,070 + BWI76_RS17510 0.75 +0.3 3,632,070 + BWI76_RS17510 0.75 -0.3 3,632,078 - BWI76_RS17510 0.76 -0.2
Or see this region's nucleotide sequence