Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11485 and BWI76_RS11490 are separated by 426 nucleotides BWI76_RS11490 and BWI76_RS11495 are separated by 92 nucleotides
BWI76_RS11485: BWI76_RS11485 - serine protein kinase PrkA, at 2,417,352 to 2,419,286
_RS11485
BWI76_RS11490: BWI76_RS11490 - MltA-interacting protein MipA, at 2,419,713 to 2,420,459
_RS11490
BWI76_RS11495: BWI76_RS11495 - hypothetical protein, at 2,420,552 to 2,421,406
_RS11495
Position (kb)
2419
2420
2421 Strain fitness (log2 ratio)
-1
0
1
2 at 2418.905 kb on + strand, within BWI76_RS11485 at 2418.905 kb on + strand, within BWI76_RS11485 at 2418.921 kb on - strand, within BWI76_RS11485 at 2419.179 kb on + strand at 2419.316 kb on + strand at 2419.324 kb on - strand at 2419.375 kb on + strand at 2419.400 kb on - strand at 2419.400 kb on - strand at 2419.400 kb on - strand at 2419.582 kb on + strand at 2419.667 kb on + strand at 2419.709 kb on - strand at 2419.760 kb on + strand at 2419.792 kb on + strand, within BWI76_RS11490 at 2420.053 kb on + strand, within BWI76_RS11490 at 2420.199 kb on + strand, within BWI76_RS11490 at 2420.228 kb on + strand, within BWI76_RS11490 at 2420.306 kb on + strand, within BWI76_RS11490 at 2420.376 kb on - strand, within BWI76_RS11490 at 2420.444 kb on + strand at 2420.452 kb on - strand at 2421.080 kb on - strand, within BWI76_RS11495 at 2421.333 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 2,418,905 + BWI76_RS11485 0.80 +0.5 2,418,905 + BWI76_RS11485 0.80 -0.1 2,418,921 - BWI76_RS11485 0.81 -0.9 2,419,179 + -0.2 2,419,316 + -0.3 2,419,324 - +0.3 2,419,375 + +0.4 2,419,400 - -0.8 2,419,400 - -0.1 2,419,400 - -0.6 2,419,582 + -0.4 2,419,667 + +0.1 2,419,709 - +1.1 2,419,760 + +1.9 2,419,792 + BWI76_RS11490 0.11 +0.4 2,420,053 + BWI76_RS11490 0.46 -0.2 2,420,199 + BWI76_RS11490 0.65 +0.8 2,420,228 + BWI76_RS11490 0.69 +0.3 2,420,306 + BWI76_RS11490 0.79 -0.1 2,420,376 - BWI76_RS11490 0.89 +1.4 2,420,444 + +0.4 2,420,452 - +0.4 2,421,080 - BWI76_RS11495 0.62 +0.3 2,421,333 + -0.3
Or see this region's nucleotide sequence