Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09715 and BWI76_RS09720 are separated by 17 nucleotides BWI76_RS09720 and BWI76_RS09725 are separated by 122 nucleotides
BWI76_RS09715: BWI76_RS09715 - hypothetical protein, at 2,036,291 to 2,037,556
_RS09715
BWI76_RS09720: BWI76_RS09720 - PTS ascorbate transporter subunit IIB, at 2,037,574 to 2,037,849
_RS09720
BWI76_RS09725: BWI76_RS09725 - MurR/RpiR family transcriptional regulator, at 2,037,972 to 2,038,829
_RS09725
Position (kb)
2037
2038 Strain fitness (log2 ratio)
-1
0
1
2 at 2036.608 kb on - strand, within BWI76_RS09715 at 2036.608 kb on - strand, within BWI76_RS09715 at 2036.663 kb on - strand, within BWI76_RS09715 at 2036.895 kb on + strand, within BWI76_RS09715 at 2036.998 kb on - strand, within BWI76_RS09715 at 2037.174 kb on + strand, within BWI76_RS09715 at 2037.228 kb on - strand, within BWI76_RS09715 at 2037.605 kb on + strand, within BWI76_RS09720 at 2037.623 kb on - strand, within BWI76_RS09720 at 2037.628 kb on - strand, within BWI76_RS09720 at 2037.728 kb on + strand, within BWI76_RS09720 at 2037.855 kb on + strand at 2038.181 kb on + strand, within BWI76_RS09725 at 2038.544 kb on + strand, within BWI76_RS09725 at 2038.585 kb on + strand, within BWI76_RS09725 at 2038.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 2,036,608 - BWI76_RS09715 0.25 +0.1 2,036,608 - BWI76_RS09715 0.25 -0.4 2,036,663 - BWI76_RS09715 0.29 +0.2 2,036,895 + BWI76_RS09715 0.48 +0.2 2,036,998 - BWI76_RS09715 0.56 +1.8 2,037,174 + BWI76_RS09715 0.70 -0.2 2,037,228 - BWI76_RS09715 0.74 +0.5 2,037,605 + BWI76_RS09720 0.11 +0.3 2,037,623 - BWI76_RS09720 0.18 +1.2 2,037,628 - BWI76_RS09720 0.20 -0.1 2,037,728 + BWI76_RS09720 0.56 +0.8 2,037,855 + +0.7 2,038,181 + BWI76_RS09725 0.24 +0.1 2,038,544 + BWI76_RS09725 0.67 -0.1 2,038,585 + BWI76_RS09725 0.71 -0.1 2,038,785 + +0.4
Or see this region's nucleotide sequence