Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07540 and BWI76_RS07545 are separated by 17 nucleotides BWI76_RS07545 and BWI76_RS07550 overlap by 11 nucleotides
BWI76_RS07540: BWI76_RS07540 - dipeptide ABC transporter ATP-binding protein DppD, at 1,595,736 to 1,596,746
_RS07540
BWI76_RS07545: BWI76_RS07545 - amidase, at 1,596,764 to 1,597,948
_RS07545
BWI76_RS07550: BWI76_RS07550 - Zn-dependent hydrolase, at 1,597,938 to 1,599,206
_RS07550
Position (kb)
1596
1597
1598 Strain fitness (log2 ratio)
-1
0
1 at 1595.783 kb on - strand at 1595.824 kb on + strand at 1595.892 kb on - strand, within BWI76_RS07540 at 1596.345 kb on + strand, within BWI76_RS07540 at 1596.422 kb on + strand, within BWI76_RS07540 at 1596.548 kb on + strand, within BWI76_RS07540 at 1596.627 kb on + strand, within BWI76_RS07540 at 1597.190 kb on + strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.449 kb on + strand, within BWI76_RS07545 at 1597.720 kb on - strand, within BWI76_RS07545 at 1597.753 kb on + strand, within BWI76_RS07545 at 1597.976 kb on - strand at 1598.065 kb on + strand, within BWI76_RS07550 at 1598.342 kb on + strand, within BWI76_RS07550 at 1598.471 kb on - strand, within BWI76_RS07550 at 1598.774 kb on + strand, within BWI76_RS07550 at 1598.852 kb on + strand, within BWI76_RS07550
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 1,595,783 - -0.2 1,595,824 + +0.1 1,595,892 - BWI76_RS07540 0.15 -0.2 1,596,345 + BWI76_RS07540 0.60 +0.1 1,596,422 + BWI76_RS07540 0.68 -0.5 1,596,548 + BWI76_RS07540 0.80 -0.4 1,596,627 + BWI76_RS07540 0.88 +0.2 1,597,190 + BWI76_RS07545 0.36 +0.4 1,597,345 - BWI76_RS07545 0.49 +0.4 1,597,345 - BWI76_RS07545 0.49 +1.4 1,597,449 + BWI76_RS07545 0.58 +0.3 1,597,720 - BWI76_RS07545 0.81 -0.2 1,597,753 + BWI76_RS07545 0.83 +0.8 1,597,976 - +0.2 1,598,065 + BWI76_RS07550 0.10 +0.7 1,598,342 + BWI76_RS07550 0.32 +0.4 1,598,471 - BWI76_RS07550 0.42 -0.2 1,598,774 + BWI76_RS07550 0.66 -0.3 1,598,852 + BWI76_RS07550 0.72 -0.1
Or see this region's nucleotide sequence