Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006014

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
2,334,176	+		ABIE53_006012	0.78	+0.0
2,334,302	+				-0.1
2,334,303	-				-1.6
2,334,303	-				-0.9
2,334,303	-				-0.6
2,334,395	+				-1.0
2,334,640	+		ABIE53_006013	0.40	+0.2
2,334,640	+		ABIE53_006013	0.40	-0.1
2,334,640	+		ABIE53_006013	0.40	+1.0
2,334,641	-		ABIE53_006013	0.40	+2.0
2,334,643	+		ABIE53_006013	0.40	-0.4
2,334,643	+		ABIE53_006013	0.40	+1.3
2,334,643	+		ABIE53_006013	0.40	-2.5
2,334,643	+		ABIE53_006013	0.40	-0.9
2,334,643	+		ABIE53_006013	0.40	-0.8
2,334,643	+		ABIE53_006013	0.40	-0.8
2,334,644	-		ABIE53_006013	0.41	+1.0
2,334,644	-		ABIE53_006013	0.41	+1.8
2,334,646	+		ABIE53_006013	0.41	+1.1
2,334,647	-		ABIE53_006013	0.41	-1.1
2,334,647	-		ABIE53_006013	0.41	-2.9
2,334,745	+		ABIE53_006013	0.53	-1.0
2,334,745	+		ABIE53_006013	0.53	+0.2
2,334,745	+		ABIE53_006013	0.53	+0.5
2,334,745	+		ABIE53_006013	0.53	-2.4
2,334,746	-		ABIE53_006013	0.53	+2.2
2,334,746	-		ABIE53_006013	0.53	+0.1
2,334,746	-		ABIE53_006013	0.53	-1.4
2,334,746	-		ABIE53_006013	0.53	-0.9
2,334,746	-		ABIE53_006013	0.53	-2.3
2,334,919	+		ABIE53_006013	0.75	+0.6
2,334,919	+		ABIE53_006013	0.75	-0.8
2,334,920	-		ABIE53_006013	0.75	-0.6
2,334,961	+		ABIE53_006013	0.80	+0.2
2,334,961	+		ABIE53_006013	0.80	+0.2
2,335,006	+		ABIE53_006013	0.85	+0.6
2,335,006	+		ABIE53_006013	0.85	+1.5
2,335,006	+		ABIE53_006013	0.85	-0.8
2,335,007	-		ABIE53_006013	0.85	+0.4
2,335,079	-				+0.1
2,335,087	+				+0.3
2,335,088	-				-0.4
2,335,152	-				+1.5
2,335,191	+				-0.4
2,335,191	+				+0.2
2,335,209	+				+1.2
2,335,209	+				+1.0
2,335,209	+				+0.5
2,335,210	-				-0.4
2,335,210	-				-0.4
2,335,210	-				-1.5
2,335,210	-				+0.4
2,335,210	-				+0.8
2,335,223	-				-1.2
2,335,291	-				-2.2
2,335,363	-		ABIE53_006014	0.11	-0.6
2,335,378	-		ABIE53_006014	0.12	+0.7
2,335,380	+		ABIE53_006014	0.12	+1.2
2,335,380	+		ABIE53_006014	0.12	-1.0
2,335,380	+		ABIE53_006014	0.12	+0.2
2,335,380	+		ABIE53_006014	0.12	+1.3
2,335,380	+		ABIE53_006014	0.12	-0.3
2,335,380	+		ABIE53_006014	0.12	-1.9
2,335,381	-		ABIE53_006014	0.12	+0.0
2,335,381	-		ABIE53_006014	0.12	+2.7
2,335,381	-		ABIE53_006014	0.12	-1.3
2,335,381	-		ABIE53_006014	0.12	-0.6
2,335,381	-		ABIE53_006014	0.12	-2.5
2,335,399	-		ABIE53_006014	0.14	-1.9
2,335,479	-		ABIE53_006014	0.18	-2.2
2,335,479	-		ABIE53_006014	0.18	-0.6
2,335,479	-		ABIE53_006014	0.18	-0.3
2,335,551	+		ABIE53_006014	0.23	-0.4
2,335,551	+		ABIE53_006014	0.23	-1.3
2,335,551	+		ABIE53_006014	0.23	-0.5
2,335,552	-		ABIE53_006014	0.23	-0.1
2,335,552	-		ABIE53_006014	0.23	-2.2
2,335,552	-		ABIE53_006014	0.23	+0.7
2,335,552	-		ABIE53_006014	0.23	+0.6
2,335,597	+		ABIE53_006014	0.25	+2.2
2,335,597	+		ABIE53_006014	0.25	-0.6
2,335,598	-		ABIE53_006014	0.26	+0.7
2,335,598	-		ABIE53_006014	0.26	-0.1
2,335,653	+		ABIE53_006014	0.29	+0.9
2,335,653	+		ABIE53_006014	0.29	+0.7
2,335,654	-		ABIE53_006014	0.29	+0.7
2,335,704	+		ABIE53_006014	0.32	-1.1
2,335,833	+		ABIE53_006014	0.40	-0.0
2,335,833	+		ABIE53_006014	0.40	-0.2
2,335,834	-		ABIE53_006014	0.40	+0.9
2,335,920	-		ABIE53_006014	0.45	-1.9
2,335,932	+		ABIE53_006014	0.46	+3.6
2,335,933	-		ABIE53_006014	0.46	-1.2
2,335,998	+		ABIE53_006014	0.50	-0.6
2,335,998	+		ABIE53_006014	0.50	+0.7
2,335,999	-		ABIE53_006014	0.50	-0.6
2,336,019	-		ABIE53_006014	0.51	+1.4
2,336,185	-		ABIE53_006014	0.61	+0.1
2,336,185	-		ABIE53_006014	0.61	-0.9
2,336,253	+		ABIE53_006014	0.65	-0.3
2,336,253	+		ABIE53_006014	0.65	+0.7
2,336,254	-		ABIE53_006014	0.65	+0.8
2,336,254	-		ABIE53_006014	0.65	-0.3
2,336,601	+		ABIE53_006014	0.86	-1.9
2,336,601	+		ABIE53_006014	0.86	+0.0
2,336,602	-		ABIE53_006014	0.86	-0.8
2,336,626	+		ABIE53_006014	0.87	+0.2
2,336,626	+		ABIE53_006014	0.87	-0.3
2,336,626	+		ABIE53_006014	0.87	-1.8
2,336,627	-		ABIE53_006014	0.87	+1.6
2,336,627	-		ABIE53_006014	0.87	-2.4
2,336,627	-		ABIE53_006014	0.87	+1.2
2,336,636	+		ABIE53_006014	0.88	-1.0
2,336,637	-		ABIE53_006014	0.88	-2.1
2,336,637	-		ABIE53_006014	0.88	-0.3
2,336,775	+				-0.6
2,336,782	-				-0.6
2,336,782	-				-0.1
2,336,811	+				-0.6
2,336,811	+				-0.6
2,336,818	+				-1.2
2,336,819	-				-2.6
2,336,874	+				-0.6
2,336,874	+				+0.5
2,336,874	+				-1.9
2,336,875	-				-3.4
2,336,875	-				-2.7
2,336,875	-				-1.3
2,336,875	-				-2.2
2,337,149	+		ABIE53_006015	0.20	-0.8
2,337,150	-		ABIE53_006015	0.20	+1.2
2,337,246	+		ABIE53_006015	0.27	+1.4
2,337,247	-		ABIE53_006015	0.28	+2.0
2,337,247	-		ABIE53_006015	0.28	+0.2
2,337,401	+		ABIE53_006015	0.39	-2.2
2,337,401	+		ABIE53_006015	0.39	-1.4
2,337,401	+		ABIE53_006015	0.39	-0.3
2,337,401	+		ABIE53_006015	0.39	+1.2
2,337,402	-		ABIE53_006015	0.39	-1.2
2,337,402	-		ABIE53_006015	0.39	+0.2
2,337,402	-		ABIE53_006015	0.39	-1.2
2,337,557	+		ABIE53_006015	0.51	-1.7
2,337,557	+		ABIE53_006015	0.51	+0.2
2,337,557	+		ABIE53_006015	0.51	-1.3
2,337,557	+		ABIE53_006015	0.51	-0.9
2,337,558	-		ABIE53_006015	0.51	-2.2
2,337,558	-		ABIE53_006015	0.51	-1.3
2,337,558	-		ABIE53_006015	0.51	-0.4
2,337,558	-		ABIE53_006015	0.51	-0.1
2,337,558	-		ABIE53_006015	0.51	-2.9
2,337,558	-		ABIE53_006015	0.51	+1.2
2,337,558	-		ABIE53_006015	0.51	+0.9
2,337,776	+		ABIE53_006015	0.67	-3.9
2,337,776	+		ABIE53_006015	0.67	-0.6
2,337,777	-		ABIE53_006015	0.67	-0.8
2,337,777	-		ABIE53_006015	0.67	-1.2
2,337,806	+		ABIE53_006015	0.69	-1.6
2,337,806	+		ABIE53_006015	0.69	+1.2
2,337,818	+		ABIE53_006015	0.70	-2.2
2,337,819	-		ABIE53_006015	0.70	-1.5
2,337,824	+		ABIE53_006015	0.70	-2.3
2,337,824	+		ABIE53_006015	0.70	-2.6
2,337,824	+		ABIE53_006015	0.70	-0.9
2,337,824	+		ABIE53_006015	0.70	-0.3
2,337,824	+		ABIE53_006015	0.70	+1.2
2,337,824	+		ABIE53_006015	0.70	-1.2
2,337,824	+		ABIE53_006015	0.70	-0.6
2,337,824	+		ABIE53_006015	0.70	-0.3
2,337,825	-		ABIE53_006015	0.70	+0.2
2,337,825	-		ABIE53_006015	0.70	+2.2
2,337,825	-		ABIE53_006015	0.70	+0.2
2,337,825	-		ABIE53_006015	0.70	+0.7
2,337,825	-		ABIE53_006015	0.70	-0.6
2,337,825	-		ABIE53_006015	0.70	-1.5
2,337,825	-		ABIE53_006015	0.70	-0.3
2,337,827	+		ABIE53_006015	0.71	+0.8
2,337,828	-		ABIE53_006015	0.71	+1.2