Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004202 and ABIE53_004203 are separated by 29 nucleotides ABIE53_004203 and ABIE53_004204 are separated by 195 nucleotides ABIE53_004204 and ABIE53_004205 are separated by 237 nucleotides
ABIE53_004202: ABIE53_004202 - H+/Cl- antiporter ClcA/CBS domain-containing protein, at 373,832 to 375,631
_004202
ABIE53_004203: ABIE53_004203 - uncharacterized protein (DUF488 family), at 375,661 to 376,206
_004203
ABIE53_004204: ABIE53_004204 - hypothetical protein, at 376,402 to 377,493
_004204
ABIE53_004205: ABIE53_004205 - hypothetical protein, at 377,731 to 379,578
_004205
Position (kb) 376
377
378 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 375.539 kb on + strand at 375.540 kb on - strand at 375.540 kb on - strand at 375.686 kb on + strand at 375.686 kb on + strand at 375.686 kb on + strand at 375.687 kb on - strand at 375.687 kb on - strand at 375.929 kb on + strand, within ABIE53_004203 at 375.930 kb on - strand, within ABIE53_004203 at 376.025 kb on + strand, within ABIE53_004203 at 376.032 kb on + strand, within ABIE53_004203 at 376.033 kb on - strand, within ABIE53_004203 at 376.117 kb on + strand, within ABIE53_004203 at 376.118 kb on - strand, within ABIE53_004203 at 376.228 kb on + strand at 376.241 kb on - strand at 376.243 kb on - strand at 376.267 kb on + strand at 376.364 kb on + strand at 376.364 kb on + strand at 376.486 kb on + strand at 376.486 kb on + strand at 376.595 kb on - strand, within ABIE53_004204 at 376.717 kb on + strand, within ABIE53_004204 at 376.750 kb on + strand, within ABIE53_004204 at 376.879 kb on - strand, within ABIE53_004204 at 376.879 kb on - strand, within ABIE53_004204 at 376.993 kb on + strand, within ABIE53_004204 at 376.994 kb on - strand, within ABIE53_004204 at 377.072 kb on - strand, within ABIE53_004204 at 377.131 kb on + strand, within ABIE53_004204 at 377.132 kb on - strand, within ABIE53_004204 at 377.132 kb on - strand, within ABIE53_004204 at 377.132 kb on - strand, within ABIE53_004204 at 377.132 kb on - strand, within ABIE53_004204 at 377.143 kb on + strand, within ABIE53_004204 at 377.144 kb on - strand, within ABIE53_004204 at 377.191 kb on + strand, within ABIE53_004204 at 377.191 kb on + strand, within ABIE53_004204 at 377.311 kb on - strand, within ABIE53_004204 at 377.342 kb on - strand, within ABIE53_004204 at 377.342 kb on - strand, within ABIE53_004204 at 377.342 kb on - strand, within ABIE53_004204 at 377.491 kb on + strand at 377.491 kb on + strand at 377.492 kb on - strand at 377.492 kb on - strand at 377.574 kb on + strand at 377.575 kb on - strand at 377.575 kb on - strand at 377.575 kb on - strand at 377.578 kb on + strand at 377.578 kb on + strand at 377.579 kb on - strand at 377.579 kb on - strand at 377.579 kb on - strand at 377.579 kb on - strand at 377.611 kb on + strand at 377.612 kb on - strand at 377.682 kb on + strand at 377.682 kb on + strand at 377.785 kb on + strand at 377.963 kb on - strand, within ABIE53_004205 at 378.019 kb on - strand, within ABIE53_004205 at 378.019 kb on - strand, within ABIE53_004205 at 378.117 kb on - strand, within ABIE53_004205 at 378.143 kb on - strand, within ABIE53_004205 at 378.242 kb on + strand, within ABIE53_004205 at 378.242 kb on + strand, within ABIE53_004205 at 378.242 kb on + strand, within ABIE53_004205 at 378.243 kb on - strand, within ABIE53_004205 at 378.243 kb on - strand, within ABIE53_004205 at 378.246 kb on + strand, within ABIE53_004205 at 378.246 kb on + strand, within ABIE53_004205 at 378.246 kb on + strand, within ABIE53_004205 at 378.246 kb on + strand, within ABIE53_004205 at 378.247 kb on - strand, within ABIE53_004205 at 378.247 kb on - strand, within ABIE53_004205 at 378.247 kb on - strand, within ABIE53_004205 at 378.247 kb on - strand, within ABIE53_004205 at 378.247 kb on - strand, within ABIE53_004205 at 378.358 kb on + strand, within ABIE53_004205 at 378.358 kb on + strand, within ABIE53_004205 at 378.359 kb on - strand, within ABIE53_004205 at 378.359 kb on - strand, within ABIE53_004205 at 378.359 kb on - strand, within ABIE53_004205 at 378.360 kb on + strand, within ABIE53_004205 at 378.360 kb on + strand, within ABIE53_004205 at 378.361 kb on - strand, within ABIE53_004205 at 378.489 kb on + strand, within ABIE53_004205
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 375,539 + -4.5 375,540 - -0.1 375,540 - -2.0 375,686 + +0.7 375,686 + +0.7 375,686 + +0.4 375,687 - -1.3 375,687 - +1.8 375,929 + ABIE53_004203 0.49 -1.2 375,930 - ABIE53_004203 0.49 -1.2 376,025 + ABIE53_004203 0.67 -0.4 376,032 + ABIE53_004203 0.68 -1.7 376,033 - ABIE53_004203 0.68 -1.6 376,117 + ABIE53_004203 0.84 -1.8 376,118 - ABIE53_004203 0.84 -0.1 376,228 + -0.6 376,241 - +0.6 376,243 - -0.1 376,267 + -1.6 376,364 + -0.3 376,364 + -1.8 376,486 + -0.1 376,486 + -2.1 376,595 - ABIE53_004204 0.18 +0.7 376,717 + ABIE53_004204 0.29 +1.2 376,750 + ABIE53_004204 0.32 -2.8 376,879 - ABIE53_004204 0.44 -2.1 376,879 - ABIE53_004204 0.44 -0.1 376,993 + ABIE53_004204 0.54 -1.5 376,994 - ABIE53_004204 0.54 -1.1 377,072 - ABIE53_004204 0.61 +0.3 377,131 + ABIE53_004204 0.67 -2.5 377,132 - ABIE53_004204 0.67 +1.2 377,132 - ABIE53_004204 0.67 +0.0 377,132 - ABIE53_004204 0.67 +0.3 377,132 - ABIE53_004204 0.67 +1.2 377,143 + ABIE53_004204 0.68 +2.2 377,144 - ABIE53_004204 0.68 +2.2 377,191 + ABIE53_004204 0.72 +3.6 377,191 + ABIE53_004204 0.72 +0.2 377,311 - ABIE53_004204 0.83 -4.1 377,342 - ABIE53_004204 0.86 -0.6 377,342 - ABIE53_004204 0.86 -1.2 377,342 - ABIE53_004204 0.86 +0.4 377,491 + -2.1 377,491 + +0.5 377,492 - -1.3 377,492 - -0.4 377,574 + +0.7 377,575 - -0.1 377,575 - +1.2 377,575 - +3.0 377,578 + -2.1 377,578 + -1.9 377,579 - +1.2 377,579 - -0.2 377,579 - +0.5 377,579 - -1.8 377,611 + -1.5 377,612 - +0.5 377,682 + -2.7 377,682 + -2.1 377,785 + +0.1 377,963 - ABIE53_004205 0.13 -0.6 378,019 - ABIE53_004205 0.16 -1.2 378,019 - ABIE53_004205 0.16 +0.3 378,117 - ABIE53_004205 0.21 -0.9 378,143 - ABIE53_004205 0.22 -1.1 378,242 + ABIE53_004205 0.28 -0.8 378,242 + ABIE53_004205 0.28 -2.3 378,242 + ABIE53_004205 0.28 -2.3 378,243 - ABIE53_004205 0.28 +1.5 378,243 - ABIE53_004205 0.28 -1.4 378,246 + ABIE53_004205 0.28 -0.6 378,246 + ABIE53_004205 0.28 +0.4 378,246 + ABIE53_004205 0.28 -1.7 378,246 + ABIE53_004205 0.28 +2.4 378,247 - ABIE53_004205 0.28 -0.6 378,247 - ABIE53_004205 0.28 +0.3 378,247 - ABIE53_004205 0.28 -0.1 378,247 - ABIE53_004205 0.28 -1.2 378,247 - ABIE53_004205 0.28 -1.2 378,358 + ABIE53_004205 0.34 +0.3 378,358 + ABIE53_004205 0.34 -0.4 378,359 - ABIE53_004205 0.34 -1.3 378,359 - ABIE53_004205 0.34 +0.3 378,359 - ABIE53_004205 0.34 +0.3 378,360 + ABIE53_004205 0.34 +0.6 378,360 + ABIE53_004205 0.34 -0.7 378,361 - ABIE53_004205 0.34 -3.3 378,489 + ABIE53_004205 0.41 +0.4
Or see this region's nucleotide sequence