Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003887 and ABIE53_003888 are separated by 64 nucleotides ABIE53_003888 and ABIE53_003889 overlap by 4 nucleotides
ABIE53_003887: ABIE53_003887 - ribose transport system substrate-binding protein, at 25,723 to 26,832
_003887
ABIE53_003888: ABIE53_003888 - L-fuculose-phosphate aldolase, at 26,897 to 27,568
_003888
ABIE53_003889: ABIE53_003889 - methylthioribose-1-phosphate isomerase, at 27,565 to 28,644
_003889
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 25.998 kb on - strand, within ABIE53_003887 at 26.078 kb on + strand, within ABIE53_003887 at 26.078 kb on + strand, within ABIE53_003887 at 26.079 kb on - strand, within ABIE53_003887 at 26.079 kb on - strand, within ABIE53_003887 at 26.079 kb on - strand, within ABIE53_003887 at 26.166 kb on - strand, within ABIE53_003887 at 26.607 kb on + strand, within ABIE53_003887 at 26.787 kb on + strand at 26.794 kb on + strand at 26.794 kb on + strand at 26.794 kb on + strand at 26.795 kb on - strand at 26.795 kb on - strand at 26.795 kb on - strand at 26.832 kb on + strand at 26.832 kb on + strand at 26.832 kb on + strand at 26.832 kb on + strand at 26.832 kb on + strand at 26.833 kb on - strand at 26.833 kb on - strand at 26.833 kb on - strand at 26.925 kb on + strand at 26.925 kb on + strand at 26.925 kb on + strand at 26.926 kb on - strand at 26.926 kb on - strand at 26.926 kb on - strand at 27.007 kb on - strand, within ABIE53_003888 at 27.210 kb on + strand, within ABIE53_003888 at 27.210 kb on + strand, within ABIE53_003888 at 27.211 kb on - strand, within ABIE53_003888 at 27.211 kb on - strand, within ABIE53_003888 at 27.211 kb on - strand, within ABIE53_003888 at 27.211 kb on - strand, within ABIE53_003888 at 27.271 kb on + strand, within ABIE53_003888 at 27.271 kb on + strand, within ABIE53_003888 at 27.271 kb on + strand, within ABIE53_003888 at 27.824 kb on + strand, within ABIE53_003889 at 27.825 kb on - strand, within ABIE53_003889 at 27.825 kb on - strand, within ABIE53_003889 at 28.269 kb on - strand, within ABIE53_003889 at 28.451 kb on + strand, within ABIE53_003889 at 28.451 kb on + strand, within ABIE53_003889 at 28.452 kb on - strand, within ABIE53_003889
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 25,998 - ABIE53_003887 0.25 -0.6 26,078 + ABIE53_003887 0.32 +1.4 26,078 + ABIE53_003887 0.32 -1.1 26,079 - ABIE53_003887 0.32 +0.2 26,079 - ABIE53_003887 0.32 -1.2 26,079 - ABIE53_003887 0.32 +0.6 26,166 - ABIE53_003887 0.40 -2.0 26,607 + ABIE53_003887 0.80 -2.4 26,787 + +0.6 26,794 + -0.8 26,794 + -1.1 26,794 + -2.8 26,795 - -0.4 26,795 - +0.6 26,795 - -2.7 26,832 + -1.2 26,832 + -0.9 26,832 + -0.4 26,832 + -0.8 26,832 + +0.2 26,833 - -0.3 26,833 - -0.4 26,833 - -0.4 26,925 + -0.7 26,925 + -0.1 26,925 + -2.3 26,926 - +3.2 26,926 - +2.2 26,926 - +1.5 27,007 - ABIE53_003888 0.16 +1.6 27,210 + ABIE53_003888 0.47 +1.2 27,210 + ABIE53_003888 0.47 +1.0 27,211 - ABIE53_003888 0.47 +0.9 27,211 - ABIE53_003888 0.47 +0.1 27,211 - ABIE53_003888 0.47 -0.4 27,211 - ABIE53_003888 0.47 +0.2 27,271 + ABIE53_003888 0.56 +0.1 27,271 + ABIE53_003888 0.56 +0.9 27,271 + ABIE53_003888 0.56 +2.2 27,824 + ABIE53_003889 0.24 +6.0 27,825 - ABIE53_003889 0.24 +2.7 27,825 - ABIE53_003889 0.24 +2.5 28,269 - ABIE53_003889 0.65 +0.2 28,451 + ABIE53_003889 0.82 +1.5 28,451 + ABIE53_003889 0.82 +3.1 28,452 - ABIE53_003889 0.82 +5.5
Or see this region's nucleotide sequence