Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003883 and ABIE53_003884 overlap by 4 nucleotides ABIE53_003884 and ABIE53_003885 are separated by 1 nucleotides ABIE53_003885 and ABIE53_003886 are separated by 31 nucleotides
ABIE53_003883: ABIE53_003883 - ribose transport system permease protein, at 23,125 to 24,126
_003883
ABIE53_003884: ABIE53_003884 - ABC-type sugar transport system ATPase subunit, at 24,123 to 24,467
_003884
ABIE53_003885: ABIE53_003885 - ABC-type sugar transport system ATPase subunit, at 24,469 to 25,419
_003885
ABIE53_003886: ABIE53_003886 - ABC-type phosphonate transport system ATPase subunit, at 25,451 to 25,660
_003886
Position (kb) 24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.126 kb on + strand at 23.126 kb on + strand at 23.126 kb on + strand at 23.126 kb on + strand at 23.126 kb on + strand at 23.126 kb on + strand at 23.127 kb on - strand at 23.127 kb on - strand at 23.188 kb on + strand at 23.188 kb on + strand at 23.189 kb on - strand at 23.432 kb on + strand, within ABIE53_003883 at 23.432 kb on + strand, within ABIE53_003883 at 23.432 kb on + strand, within ABIE53_003883 at 23.432 kb on + strand, within ABIE53_003883 at 23.432 kb on + strand, within ABIE53_003883 at 23.432 kb on + strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.433 kb on - strand, within ABIE53_003883 at 23.789 kb on - strand, within ABIE53_003883 at 23.932 kb on + strand, within ABIE53_003883 at 24.143 kb on + strand at 24.143 kb on + strand at 24.144 kb on - strand at 24.144 kb on - strand at 24.144 kb on - strand at 24.211 kb on + strand, within ABIE53_003884 at 24.211 kb on + strand, within ABIE53_003884 at 24.211 kb on + strand, within ABIE53_003884 at 24.211 kb on + strand, within ABIE53_003884 at 24.212 kb on - strand, within ABIE53_003884 at 24.212 kb on - strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.305 kb on + strand, within ABIE53_003884 at 24.306 kb on - strand, within ABIE53_003884 at 24.306 kb on - strand, within ABIE53_003884 at 24.306 kb on - strand, within ABIE53_003884 at 24.306 kb on - strand, within ABIE53_003884 at 24.306 kb on - strand, within ABIE53_003884 at 24.314 kb on - strand, within ABIE53_003884 at 24.314 kb on - strand, within ABIE53_003884 at 24.333 kb on + strand, within ABIE53_003884 at 24.621 kb on + strand, within ABIE53_003885 at 24.622 kb on - strand, within ABIE53_003885 at 24.622 kb on - strand, within ABIE53_003885 at 24.622 kb on - strand, within ABIE53_003885 at 24.623 kb on + strand, within ABIE53_003885 at 24.624 kb on - strand, within ABIE53_003885 at 24.624 kb on - strand, within ABIE53_003885 at 24.624 kb on - strand, within ABIE53_003885 at 24.624 kb on - strand, within ABIE53_003885 at 24.766 kb on + strand, within ABIE53_003885 at 24.767 kb on - strand, within ABIE53_003885 at 24.882 kb on - strand, within ABIE53_003885 at 24.882 kb on - strand, within ABIE53_003885 at 25.069 kb on + strand, within ABIE53_003885 at 25.069 kb on + strand, within ABIE53_003885 at 25.069 kb on + strand, within ABIE53_003885 at 25.070 kb on - strand, within ABIE53_003885 at 25.076 kb on + strand, within ABIE53_003885 at 25.149 kb on + strand, within ABIE53_003885 at 25.149 kb on + strand, within ABIE53_003885 at 25.364 kb on + strand at 25.364 kb on + strand at 25.365 kb on - strand at 25.365 kb on - strand at 25.427 kb on - strand at 25.454 kb on + strand at 25.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days remove 23,126 + +1.1 23,126 + +1.6 23,126 + -1.2 23,126 + -1.7 23,126 + +1.7 23,126 + +0.6 23,127 - +0.1 23,127 - -0.6 23,188 + +1.7 23,188 + +0.4 23,189 - +1.3 23,432 + ABIE53_003883 0.31 +0.2 23,432 + ABIE53_003883 0.31 -0.6 23,432 + ABIE53_003883 0.31 +0.1 23,432 + ABIE53_003883 0.31 -0.5 23,432 + ABIE53_003883 0.31 +0.8 23,432 + ABIE53_003883 0.31 -1.9 23,433 - ABIE53_003883 0.31 +0.9 23,433 - ABIE53_003883 0.31 +3.7 23,433 - ABIE53_003883 0.31 -0.4 23,433 - ABIE53_003883 0.31 +1.9 23,433 - ABIE53_003883 0.31 -1.6 23,433 - ABIE53_003883 0.31 -0.5 23,433 - ABIE53_003883 0.31 +1.2 23,433 - ABIE53_003883 0.31 +1.3 23,433 - ABIE53_003883 0.31 +1.0 23,433 - ABIE53_003883 0.31 +1.6 23,433 - ABIE53_003883 0.31 -2.5 23,789 - ABIE53_003883 0.66 -0.4 23,932 + ABIE53_003883 0.81 +2.4 24,143 + -0.1 24,143 + +0.6 24,144 - -0.4 24,144 - -0.4 24,144 - +0.2 24,211 + ABIE53_003884 0.26 +0.5 24,211 + ABIE53_003884 0.26 -3.5 24,211 + ABIE53_003884 0.26 -0.1 24,211 + ABIE53_003884 0.26 +0.6 24,212 - ABIE53_003884 0.26 +2.6 24,212 - ABIE53_003884 0.26 -1.5 24,305 + ABIE53_003884 0.53 -0.1 24,305 + ABIE53_003884 0.53 -0.6 24,305 + ABIE53_003884 0.53 -0.6 24,305 + ABIE53_003884 0.53 -1.7 24,305 + ABIE53_003884 0.53 +0.8 24,305 + ABIE53_003884 0.53 +1.1 24,305 + ABIE53_003884 0.53 +0.2 24,305 + ABIE53_003884 0.53 -0.1 24,306 - ABIE53_003884 0.53 -3.1 24,306 - ABIE53_003884 0.53 -0.2 24,306 - ABIE53_003884 0.53 +3.5 24,306 - ABIE53_003884 0.53 +0.7 24,306 - ABIE53_003884 0.53 -0.4 24,314 - ABIE53_003884 0.55 -0.4 24,314 - ABIE53_003884 0.55 -0.9 24,333 + ABIE53_003884 0.61 -0.1 24,621 + ABIE53_003885 0.16 -0.1 24,622 - ABIE53_003885 0.16 +0.5 24,622 - ABIE53_003885 0.16 +0.1 24,622 - ABIE53_003885 0.16 -1.6 24,623 + ABIE53_003885 0.16 +0.6 24,624 - ABIE53_003885 0.16 -2.9 24,624 - ABIE53_003885 0.16 -2.5 24,624 - ABIE53_003885 0.16 -0.1 24,624 - ABIE53_003885 0.16 -2.4 24,766 + ABIE53_003885 0.31 -1.8 24,767 - ABIE53_003885 0.31 -1.6 24,882 - ABIE53_003885 0.43 +0.3 24,882 - ABIE53_003885 0.43 -1.1 25,069 + ABIE53_003885 0.63 -0.6 25,069 + ABIE53_003885 0.63 -1.5 25,069 + ABIE53_003885 0.63 +0.6 25,070 - ABIE53_003885 0.63 -0.8 25,076 + ABIE53_003885 0.64 -1.5 25,149 + ABIE53_003885 0.72 +0.9 25,149 + ABIE53_003885 0.72 -1.8 25,364 + -2.7 25,364 + +0.2 25,365 - +0.1 25,365 - +0.5 25,427 - +1.9 25,454 + -0.1 25,455 - -1.7
Or see this region's nucleotide sequence