Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003693

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
4,146,612	+				-0.2
4,146,613	-				-0.9
4,146,666	+		ABIE53_003691	0.15	-0.4
4,146,666	+		ABIE53_003691	0.15	-2.0
4,146,666	+		ABIE53_003691	0.15	-1.3
4,146,666	+		ABIE53_003691	0.15	-1.3
4,146,666	+		ABIE53_003691	0.15	-1.2
4,146,666	+		ABIE53_003691	0.15	-3.3
4,146,666	+		ABIE53_003691	0.15	-1.4
4,146,666	+		ABIE53_003691	0.15	-0.6
4,146,666	+		ABIE53_003691	0.15	-1.9
4,146,666	+		ABIE53_003691	0.15	+0.4
4,146,666	+		ABIE53_003691	0.15	-2.5
4,146,667	-		ABIE53_003691	0.15	-0.7
4,146,667	-		ABIE53_003691	0.15	-0.1
4,146,667	-		ABIE53_003691	0.15	-0.6
4,146,667	-		ABIE53_003691	0.15	+0.5
4,146,667	-		ABIE53_003691	0.15	-0.9
4,146,667	-		ABIE53_003691	0.15	-0.3
4,146,667	-		ABIE53_003691	0.15	-3.0
4,146,667	-		ABIE53_003691	0.15	-3.3
4,146,667	-		ABIE53_003691	0.15	+0.9
4,146,667	-		ABIE53_003691	0.15	+0.4
4,146,667	-		ABIE53_003691	0.15	-0.1
4,146,667	-		ABIE53_003691	0.15	-1.3
4,146,667	-		ABIE53_003691	0.15	+1.0
4,146,667	-		ABIE53_003691	0.15	-0.2
4,146,667	-		ABIE53_003691	0.15	-0.6
4,146,667	-		ABIE53_003691	0.15	+1.3
4,146,667	-		ABIE53_003691	0.15	+0.4
4,146,732	+		ABIE53_003691	0.33	-1.8
4,146,732	+		ABIE53_003691	0.33	-2.2
4,146,732	+		ABIE53_003691	0.33	-0.8
4,146,732	+		ABIE53_003691	0.33	+2.4
4,146,732	+		ABIE53_003691	0.33	-1.8
4,146,732	+		ABIE53_003691	0.33	+1.4
4,146,732	+		ABIE53_003691	0.33	-0.3
4,146,732	+		ABIE53_003691	0.33	-1.6
4,146,733	-		ABIE53_003691	0.33	+0.6
4,146,733	-		ABIE53_003691	0.33	+0.3
4,146,733	-		ABIE53_003691	0.33	+3.0
4,146,733	-		ABIE53_003691	0.33	-0.9
4,146,781	+		ABIE53_003691	0.46	+0.2
4,146,781	+		ABIE53_003691	0.46	-0.9
4,146,781	+		ABIE53_003691	0.46	+1.8
4,146,781	+		ABIE53_003691	0.46	+0.4
4,146,781	+		ABIE53_003691	0.46	+1.9
4,146,781	+		ABIE53_003691	0.46	-1.2
4,146,781	+		ABIE53_003691	0.46	-2.1
4,146,781	+		ABIE53_003691	0.46	+1.0
4,146,781	+		ABIE53_003691	0.46	+2.4
4,146,782	-		ABIE53_003691	0.47	-1.0
4,146,782	-		ABIE53_003691	0.47	-1.2
4,146,782	-		ABIE53_003691	0.47	+0.7
4,146,782	-		ABIE53_003691	0.47	-0.9
4,146,782	-		ABIE53_003691	0.47	-0.5
4,146,782	-		ABIE53_003691	0.47	-2.0
4,146,782	-		ABIE53_003691	0.47	-0.3
4,146,782	-		ABIE53_003691	0.47	+0.5
4,146,782	-		ABIE53_003691	0.47	-0.2
4,146,979	+				-0.6
4,146,979	+				-1.3
4,146,979	+				-1.2
4,146,979	+				-2.2
4,146,980	-				-0.8
4,146,980	-				-0.6
4,146,980	-				+0.6
4,146,980	-				+0.7
4,146,980	-				-0.6
4,146,980	-				+0.4
4,146,980	-				-0.0
4,146,980	-				+2.4
4,146,980	-				-1.9
4,146,980	-				+3.0
4,146,980	-				-0.2
4,146,980	-				+2.1
4,146,999	+				-3.2
4,146,999	+				+0.8
4,147,102	+				-0.2
4,147,107	+		ABIE53_003692	0.10	+2.6
4,147,107	+		ABIE53_003692	0.10	-0.9
4,147,107	+		ABIE53_003692	0.10	-0.8
4,147,108	-		ABIE53_003692	0.10	+2.4
4,147,108	-		ABIE53_003692	0.10	-2.0
4,147,108	-		ABIE53_003692	0.10	-0.7
4,147,108	-		ABIE53_003692	0.10	+1.6
4,147,108	-		ABIE53_003692	0.10	+2.1
4,147,108	-		ABIE53_003692	0.10	-0.9
4,147,108	-		ABIE53_003692	0.10	-1.6
4,147,113	+		ABIE53_003692	0.12	-0.3
4,147,113	+		ABIE53_003692	0.12	+1.8
4,147,113	+		ABIE53_003692	0.12	+1.1
4,147,113	+		ABIE53_003692	0.12	+1.2
4,147,113	+		ABIE53_003692	0.12	-0.6
4,147,114	-		ABIE53_003692	0.12	+0.8
4,147,114	-		ABIE53_003692	0.12	-1.1
4,147,114	-		ABIE53_003692	0.12	-1.4
4,147,114	-		ABIE53_003692	0.12	-1.1
4,147,114	-		ABIE53_003692	0.12	-0.9
4,147,114	-		ABIE53_003692	0.12	+0.2
4,147,114	-		ABIE53_003692	0.12	-1.4
4,147,114	-		ABIE53_003692	0.12	-2.4
4,147,114	-		ABIE53_003692	0.12	+0.4
4,147,129	+		ABIE53_003692	0.16	+0.3
4,147,129	+		ABIE53_003692	0.16	+1.7
4,147,129	+		ABIE53_003692	0.16	-2.7
4,147,129	+		ABIE53_003692	0.16	-4.0
4,147,129	+		ABIE53_003692	0.16	-0.2
4,147,129	+		ABIE53_003692	0.16	+1.1
4,147,130	-		ABIE53_003692	0.16	+0.7
4,147,130	-		ABIE53_003692	0.16	-2.0
4,147,130	-		ABIE53_003692	0.16	-2.1
4,147,130	-		ABIE53_003692	0.16	-0.7
4,147,130	-		ABIE53_003692	0.16	-0.9
4,147,130	-		ABIE53_003692	0.16	-1.1
4,147,132	+		ABIE53_003692	0.16	+0.1
4,147,132	+		ABIE53_003692	0.16	-3.0
4,147,132	+		ABIE53_003692	0.16	+1.3
4,147,132	+		ABIE53_003692	0.16	-0.9
4,147,132	+		ABIE53_003692	0.16	-0.4
4,147,132	+		ABIE53_003692	0.16	-0.8
4,147,132	+		ABIE53_003692	0.16	-0.9
4,147,133	-		ABIE53_003692	0.17	+0.3
4,147,133	-		ABIE53_003692	0.17	-1.5
4,147,133	-		ABIE53_003692	0.17	-0.1
4,147,133	-		ABIE53_003692	0.17	-0.4
4,147,133	-		ABIE53_003692	0.17	-0.8
4,147,133	-		ABIE53_003692	0.17	+1.1
4,147,133	-		ABIE53_003692	0.17	-0.4
4,147,133	-		ABIE53_003692	0.17	-1.3
4,147,133	-		ABIE53_003692	0.17	+1.2
4,147,133	-		ABIE53_003692	0.17	+0.6
4,147,133	-		ABIE53_003692	0.17	+1.0
4,147,133	-		ABIE53_003692	0.17	-1.8
4,147,137	+		ABIE53_003692	0.18	-3.4
4,147,137	+		ABIE53_003692	0.18	-0.9
4,147,137	+		ABIE53_003692	0.18	-0.2
4,147,138	-		ABIE53_003692	0.18	+1.5
4,147,138	-		ABIE53_003692	0.18	-0.8
4,147,138	-		ABIE53_003692	0.18	-0.4
4,147,138	-		ABIE53_003692	0.18	+0.4
4,147,138	-		ABIE53_003692	0.18	-2.9
4,147,138	-		ABIE53_003692	0.18	-2.1
4,147,138	-		ABIE53_003692	0.18	+0.5
4,147,138	-		ABIE53_003692	0.18	-0.5
4,147,138	-		ABIE53_003692	0.18	-0.4
4,147,206	-		ABIE53_003692	0.35	-1.3
4,147,213	-		ABIE53_003692	0.37	+0.8
4,147,213	-		ABIE53_003692	0.37	-1.1
4,147,266	+		ABIE53_003692	0.50	-0.9
4,147,266	+		ABIE53_003692	0.50	-0.6
4,147,266	+		ABIE53_003692	0.50	-1.1
4,147,267	-		ABIE53_003692	0.51	+1.1
4,147,267	-		ABIE53_003692	0.51	-0.7
4,147,267	-		ABIE53_003692	0.51	-0.7
4,147,267	-		ABIE53_003692	0.51	-2.0
4,147,267	-		ABIE53_003692	0.51	-1.9
4,147,267	-		ABIE53_003692	0.51	-0.4
4,147,299	+		ABIE53_003692	0.59	-0.1
4,147,299	+		ABIE53_003692	0.59	-3.1
4,147,299	+		ABIE53_003692	0.59	-3.0
4,147,299	+		ABIE53_003692	0.59	-0.4
4,147,299	+		ABIE53_003692	0.59	-0.7
4,147,299	+		ABIE53_003692	0.59	+0.5
4,147,299	+		ABIE53_003692	0.59	+0.4
4,147,299	+		ABIE53_003692	0.59	-1.7
4,147,300	-		ABIE53_003692	0.59	+0.2
4,147,300	-		ABIE53_003692	0.59	+0.9
4,147,300	-		ABIE53_003692	0.59	-1.6
4,147,300	-		ABIE53_003692	0.59	-4.1
4,147,300	-		ABIE53_003692	0.59	+0.8
4,147,300	-		ABIE53_003692	0.59	-1.9
4,147,300	-		ABIE53_003692	0.59	+2.4
4,147,300	-		ABIE53_003692	0.59	-0.4
4,147,356	+		ABIE53_003692	0.73	-0.4
4,147,356	+		ABIE53_003692	0.73	-0.5
4,147,356	+		ABIE53_003692	0.73	-1.1
4,147,356	+		ABIE53_003692	0.73	-0.4
4,147,356	+		ABIE53_003692	0.73	-1.5
4,147,356	+		ABIE53_003692	0.73	+0.4
4,147,356	+		ABIE53_003692	0.73	-1.4
4,147,357	-		ABIE53_003692	0.73	-2.0
4,147,357	-		ABIE53_003692	0.73	-0.6
4,147,357	-		ABIE53_003692	0.73	-2.4
4,147,357	-		ABIE53_003692	0.73	-0.9
4,147,357	-		ABIE53_003692	0.73	+0.4
4,147,357	-		ABIE53_003692	0.73	+0.2
4,147,365	+		ABIE53_003692	0.75	+1.2
4,147,366	-		ABIE53_003692	0.76	+0.6
4,147,366	-		ABIE53_003692	0.76	-2.2
4,147,366	-		ABIE53_003692	0.76	-0.9
4,147,366	-		ABIE53_003692	0.76	+0.4
4,147,366	-		ABIE53_003692	0.76	-1.1
4,147,440	+				+0.1
4,147,981	-				-2.8
4,147,981	-				-0.9
4,147,981	-				+1.4
4,147,981	-				-0.2
4,147,981	-				-0.6
4,147,981	-				+1.4
4,147,981	-				+0.4
4,147,981	-				-0.6
4,147,981	-				-0.6
4,147,981	-				-1.7
4,147,981	-				-2.1
4,147,981	-				-1.2
4,147,981	-				+0.8
4,147,981	-				+1.4
4,147,981	-				-0.4
4,147,981	-				-0.3