Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003553

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
3,991,281	+				-2.7
3,991,281	+				-3.2
3,991,281	+				+0.4
3,991,282	-				-1.6
3,991,282	-				+2.2
3,991,287	+				+0.1
3,991,287	+				-1.4
3,991,287	+				-2.0
3,991,287	+				-2.9
3,991,288	-				+1.4
3,991,339	+		ABIE53_003552	0.13	+1.7
3,991,339	+		ABIE53_003552	0.13	-1.7
3,991,339	+		ABIE53_003552	0.13	-3.2
3,991,339	+		ABIE53_003552	0.13	+0.3
3,991,340	-		ABIE53_003552	0.13	+1.5
3,991,340	-		ABIE53_003552	0.13	+1.4
3,991,524	+		ABIE53_003552	0.31	+2.8
3,991,525	-		ABIE53_003552	0.31	-1.5
3,991,525	-		ABIE53_003552	0.31	-0.2
3,991,525	-		ABIE53_003552	0.31	+0.5
3,991,525	-		ABIE53_003552	0.31	+0.8
3,991,597	+		ABIE53_003552	0.38	-0.2
3,991,598	-		ABIE53_003552	0.38	+1.0
3,991,598	-		ABIE53_003552	0.38	-2.0
3,991,598	-		ABIE53_003552	0.38	-2.2
3,991,598	-		ABIE53_003552	0.38	-2.3
3,991,598	-		ABIE53_003552	0.38	+1.1
3,991,598	-		ABIE53_003552	0.38	-0.4
3,991,605	+		ABIE53_003552	0.39	-0.1
3,991,605	+		ABIE53_003552	0.39	-0.6
3,991,605	+		ABIE53_003552	0.39	-2.1
3,991,606	-		ABIE53_003552	0.39	-0.0
3,991,606	-		ABIE53_003552	0.39	+0.7
3,991,606	-		ABIE53_003552	0.39	-3.2
3,991,606	-		ABIE53_003552	0.39	-0.3
3,991,606	-		ABIE53_003552	0.39	-1.5
3,991,606	-		ABIE53_003552	0.39	-1.3
3,991,606	-		ABIE53_003552	0.39	-1.9
3,991,606	-		ABIE53_003552	0.39	-0.4
3,991,606	-		ABIE53_003552	0.39	-2.4
3,991,711	+		ABIE53_003552	0.49	-1.2
3,991,711	+		ABIE53_003552	0.49	+0.5
3,991,712	-		ABIE53_003552	0.50	+3.0
3,991,712	-		ABIE53_003552	0.50	-0.2
3,991,792	+		ABIE53_003552	0.57	-0.9
3,991,793	-		ABIE53_003552	0.58	-0.2
3,991,793	-		ABIE53_003552	0.58	-1.9
3,991,793	-		ABIE53_003552	0.58	-0.8
3,991,815	+		ABIE53_003552	0.60	+2.0
3,991,815	+		ABIE53_003552	0.60	-2.3
3,991,815	+		ABIE53_003552	0.60	-1.5
3,991,815	+		ABIE53_003552	0.60	-2.7
3,991,815	+		ABIE53_003552	0.60	+2.4
3,991,816	-		ABIE53_003552	0.60	-0.8
3,991,816	-		ABIE53_003552	0.60	-0.5
3,991,816	-		ABIE53_003552	0.60	+0.4
3,991,907	+		ABIE53_003552	0.69	-2.3
3,991,907	+		ABIE53_003552	0.69	-0.7
3,991,907	+		ABIE53_003552	0.69	-1.6
3,991,907	+		ABIE53_003552	0.69	-0.6
3,991,908	-		ABIE53_003552	0.69	-1.6
3,991,908	-		ABIE53_003552	0.69	-0.2
3,991,908	-		ABIE53_003552	0.69	+1.1
3,992,118	+		ABIE53_003552	0.89	-0.3
3,992,118	+		ABIE53_003552	0.89	-1.3
3,992,118	+		ABIE53_003552	0.89	-0.4
3,992,119	-		ABIE53_003552	0.90	-0.9
3,992,119	-		ABIE53_003552	0.90	-3.0
3,992,119	-		ABIE53_003552	0.90	-1.5
3,992,119	-		ABIE53_003552	0.90	+0.6
3,992,215	+				-0.9
3,992,216	-				-1.1
3,992,216	-				+0.1
3,992,216	-				+0.8
3,992,421	+				-2.8
3,992,421	+				-2.0
3,992,422	-				-1.2
3,992,488	+		ABIE53_003553	0.14	-4.2
3,992,488	+		ABIE53_003553	0.14	-4.1
3,992,488	+		ABIE53_003553	0.14	-2.2
3,992,489	-		ABIE53_003553	0.14	+0.4
3,992,489	-		ABIE53_003553	0.14	+0.3
3,992,489	-		ABIE53_003553	0.14	+2.6
3,992,489	-		ABIE53_003553	0.14	+1.7
3,992,489	-		ABIE53_003553	0.14	-0.8
3,992,489	-		ABIE53_003553	0.14	-1.8
3,992,498	+		ABIE53_003553	0.14	-1.2
3,992,498	+		ABIE53_003553	0.14	-1.8
3,992,498	+		ABIE53_003553	0.14	-0.2
3,992,498	+		ABIE53_003553	0.14	-2.4
3,992,499	-		ABIE53_003553	0.14	+0.4
3,992,499	-		ABIE53_003553	0.14	-0.6
3,992,500	+		ABIE53_003553	0.14	+0.9
3,992,500	+		ABIE53_003553	0.14	-2.3
3,992,500	+		ABIE53_003553	0.14	+0.8
3,992,500	+		ABIE53_003553	0.14	+0.4
3,992,500	+		ABIE53_003553	0.14	-1.7
3,992,500	+		ABIE53_003553	0.14	+1.7
3,992,501	-		ABIE53_003553	0.14	+0.5
3,992,501	-		ABIE53_003553	0.14	-0.9
3,992,501	-		ABIE53_003553	0.14	+0.4
3,992,501	-		ABIE53_003553	0.14	-0.2
3,992,501	-		ABIE53_003553	0.14	+3.3
3,992,501	-		ABIE53_003553	0.14	-2.0
3,992,501	-		ABIE53_003553	0.14	-1.2
3,992,501	-		ABIE53_003553	0.14	-0.4
3,992,501	-		ABIE53_003553	0.14	+0.3
3,992,501	-		ABIE53_003553	0.14	-2.0
3,992,731	+		ABIE53_003553	0.29	+0.1
3,992,732	-		ABIE53_003553	0.29	+1.6
3,992,732	-		ABIE53_003553	0.29	+0.8
3,992,732	-		ABIE53_003553	0.29	+0.8
3,992,732	-		ABIE53_003553	0.29	-1.7
3,992,911	+		ABIE53_003553	0.41	+2.1
3,992,950	-		ABIE53_003553	0.43	+0.4
3,992,950	-		ABIE53_003553	0.43	+2.4
3,992,950	-		ABIE53_003553	0.43	-0.4
3,993,067	+		ABIE53_003553	0.51	+1.6
3,993,067	+		ABIE53_003553	0.51	-0.5
3,993,067	+		ABIE53_003553	0.51	-1.2
3,993,067	+		ABIE53_003553	0.51	-0.2
3,993,067	+		ABIE53_003553	0.51	+1.3
3,993,068	-		ABIE53_003553	0.51	+0.3
3,993,068	-		ABIE53_003553	0.51	-2.4
3,993,068	-		ABIE53_003553	0.51	+1.0
3,993,068	-		ABIE53_003553	0.51	-0.1
3,993,073	+		ABIE53_003553	0.51	-1.5
3,993,073	+		ABIE53_003553	0.51	-1.4
3,993,073	+		ABIE53_003553	0.51	-1.2
3,993,073	+		ABIE53_003553	0.51	+1.2
3,993,073	+		ABIE53_003553	0.51	-2.3
3,993,073	+		ABIE53_003553	0.51	-0.6
3,993,073	+		ABIE53_003553	0.51	-2.5
3,993,074	-		ABIE53_003553	0.51	-3.2
3,993,074	-		ABIE53_003553	0.51	+2.9
3,993,074	-		ABIE53_003553	0.51	-1.9
3,993,074	-		ABIE53_003553	0.51	+0.6
3,993,074	-		ABIE53_003553	0.51	-2.1
3,993,074	-		ABIE53_003553	0.51	-1.8
3,993,074	-		ABIE53_003553	0.51	-1.5
3,993,199	+		ABIE53_003553	0.59	+0.1
3,993,200	-		ABIE53_003553	0.59	-0.8
3,993,200	-		ABIE53_003553	0.59	+2.4
3,993,226	+		ABIE53_003553	0.61	-1.3
3,993,226	+		ABIE53_003553	0.61	-1.2
3,993,226	+		ABIE53_003553	0.61	+1.9
3,993,226	+		ABIE53_003553	0.61	-0.1
3,993,226	+		ABIE53_003553	0.61	-2.8
3,993,226	+		ABIE53_003553	0.61	-1.3
3,993,226	+		ABIE53_003553	0.61	-0.8
3,993,227	-		ABIE53_003553	0.61	-0.3
3,993,227	-		ABIE53_003553	0.61	+0.1
3,993,227	-		ABIE53_003553	0.61	-0.2
3,993,227	-		ABIE53_003553	0.61	-0.0
3,993,541	+		ABIE53_003553	0.81	-2.0
3,993,541	+		ABIE53_003553	0.81	-2.7
3,993,541	+		ABIE53_003553	0.81	-0.6
3,993,541	+		ABIE53_003553	0.81	-1.5
3,993,541	+		ABIE53_003553	0.81	+0.4
3,993,541	+		ABIE53_003553	0.81	+0.4
3,993,541	+		ABIE53_003553	0.81	-1.8
3,993,541	+		ABIE53_003553	0.81	-4.3
3,993,542	-		ABIE53_003553	0.81	-2.2
3,993,542	-		ABIE53_003553	0.81	-1.2
3,993,542	-		ABIE53_003553	0.81	+1.4
3,993,542	-		ABIE53_003553	0.81	+1.4
3,993,542	-		ABIE53_003553	0.81	-0.0
3,993,542	-		ABIE53_003553	0.81	-0.6
3,993,542	-		ABIE53_003553	0.81	-1.7
3,993,542	-		ABIE53_003553	0.81	-1.3
3,993,542	-		ABIE53_003553	0.81	-0.6
3,993,600	-		ABIE53_003553	0.85	+0.5
3,993,600	-		ABIE53_003553	0.85	-2.2
3,993,664	-		ABIE53_003553	0.89	-1.0
3,993,664	-		ABIE53_003553	0.89	-0.9
3,993,783	-				-1.1
3,993,783	-				-1.5
3,993,795	+				-2.0
3,993,796	-				-0.8
3,993,894	+				+0.1
3,993,894	+				+0.1
3,993,894	+				-1.9
3,993,894	+				-2.1
3,993,894	+				-2.1
3,993,894	+				-2.6
3,993,894	+				+0.4
3,993,895	-				+0.8
3,993,895	-				+0.3
3,993,895	-				+6.7
3,993,905	+				+0.3
3,993,905	+				-1.1
3,993,905	+				-1.7
3,993,905	+				+2.4
3,993,905	+				-1.9
3,993,905	+				-0.7
3,993,905	+				-1.1
3,993,905	+				-3.3
3,993,905	+				+1.4
3,993,905	+				-1.6
3,993,906	-				+0.1
3,993,906	-				+0.9
3,993,906	-				+2.4
3,993,906	-				+0.5
3,993,906	-				+0.6
3,993,906	-				-0.6
3,993,906	-				+1.5
3,993,906	-				-0.5
3,993,906	-				-1.6
3,993,911	+				-0.8
3,993,912	-				+0.5
3,993,928	-				+0.5
3,994,095	+		ABIE53_003554	0.12	-1.2
3,994,095	+		ABIE53_003554	0.12	-0.5
3,994,095	+		ABIE53_003554	0.12	-0.4
3,994,095	+		ABIE53_003554	0.12	-1.1
3,994,096	-		ABIE53_003554	0.12	-1.3
3,994,096	-		ABIE53_003554	0.12	-1.0
3,994,096	-		ABIE53_003554	0.12	+0.8
3,994,096	-		ABIE53_003554	0.12	+0.8
3,994,096	-		ABIE53_003554	0.12	+0.8
3,994,096	-		ABIE53_003554	0.12	-0.8
3,994,297	-		ABIE53_003554	0.32	+1.5
3,994,476	+		ABIE53_003554	0.50	-0.6
3,994,477	-		ABIE53_003554	0.50	-0.7
3,994,477	-		ABIE53_003554	0.50	+1.5
3,994,477	-		ABIE53_003554	0.50	-1.9
3,994,477	-		ABIE53_003554	0.50	+0.1
3,994,569	+		ABIE53_003554	0.59	+3.1
3,994,569	+		ABIE53_003554	0.59	-0.8