Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002087

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
2,335,837	+				+1.3
2,336,359	+		ABIE53_002086	0.64	+1.9
2,336,359	+		ABIE53_002086	0.64	-0.6
2,336,359	+		ABIE53_002086	0.64	-0.9
2,336,359	+		ABIE53_002086	0.64	-1.5
2,336,359	+		ABIE53_002086	0.64	+1.7
2,336,359	+		ABIE53_002086	0.64	-1.2
2,336,359	+		ABIE53_002086	0.64	-0.0
2,336,360	-		ABIE53_002086	0.64	+1.3
2,336,360	-		ABIE53_002086	0.64	+1.7
2,336,360	-		ABIE53_002086	0.64	-0.5
2,336,360	-		ABIE53_002086	0.64	-0.6
2,336,360	-		ABIE53_002086	0.64	-0.7
2,336,360	-		ABIE53_002086	0.64	+2.3
2,336,360	-		ABIE53_002086	0.64	+0.8
2,336,360	-		ABIE53_002086	0.64	-0.0
2,336,360	-		ABIE53_002086	0.64	-0.0
2,336,662	+				-2.2
2,336,662	+				-0.5
2,336,662	+				-0.4
2,336,662	+				+2.8
2,336,662	+				+0.7
2,336,663	-				+0.9
2,336,663	-				+0.7
2,336,663	-				-2.0
2,336,663	-				+0.8
2,336,736	+				+1.0
2,336,736	+				-2.7
2,336,736	+				-0.9
2,336,736	+				-0.0
2,336,736	+				-0.6
2,336,736	+				-0.0
2,336,737	-				-0.3
2,336,737	-				-1.5
2,336,737	-				-0.6
2,336,741	+				-1.5
2,336,761	+				-2.2
2,336,761	+				+2.3
2,336,761	+				-1.1
2,336,761	+				-0.5
2,336,761	+				+0.1
2,336,761	+				+0.7
2,336,761	+				-2.0
2,336,762	-				-1.7
2,336,762	-				+1.7
2,336,762	-				+0.7
2,336,859	+				-1.9
2,336,883	+				+2.3
2,336,883	+				-1.5
2,336,884	-				+0.5
2,336,936	+				-0.5
2,336,936	+				+0.3
2,336,936	+				-0.9
2,336,936	+				-2.9
2,336,936	+				-1.2
2,336,936	+				-1.9
2,336,936	+				+1.0
2,336,936	+				-1.9
2,336,937	-				-1.6
2,336,937	-				-1.0
2,336,937	-				+0.3
2,336,937	-				+0.8
2,336,937	-				-0.0
2,336,937	-				+1.8
2,337,796	+		ABIE53_002087	0.37	-0.2
2,337,796	+		ABIE53_002087	0.37	-0.7
2,337,796	+		ABIE53_002087	0.37	-1.7
2,337,796	+		ABIE53_002087	0.37	-0.7
2,337,797	-		ABIE53_002087	0.38	+0.4
2,337,797	-		ABIE53_002087	0.38	+1.3
2,337,797	-		ABIE53_002087	0.38	+0.7
2,337,797	-		ABIE53_002087	0.38	+0.2
2,337,797	-		ABIE53_002087	0.38	-0.7
2,337,797	-		ABIE53_002087	0.38	+0.3
2,337,820	+		ABIE53_002087	0.38	-0.3
2,337,821	-		ABIE53_002087	0.38	-1.7
2,337,854	+		ABIE53_002087	0.40	-0.0
2,337,884	+		ABIE53_002087	0.41	-0.3
2,337,884	+		ABIE53_002087	0.41	-0.1
2,337,884	+		ABIE53_002087	0.41	+1.5
2,337,884	+		ABIE53_002087	0.41	-0.3
2,337,884	+		ABIE53_002087	0.41	-1.2
2,337,884	+		ABIE53_002087	0.41	+0.3
2,337,885	-		ABIE53_002087	0.41	+0.4
2,337,885	-		ABIE53_002087	0.41	-2.1
2,337,885	-		ABIE53_002087	0.41	-1.6
2,337,885	-		ABIE53_002087	0.41	+0.1
2,337,885	-		ABIE53_002087	0.41	+1.6
2,337,885	-		ABIE53_002087	0.41	+2.3
2,338,086	-		ABIE53_002087	0.48	+0.7
2,338,086	-		ABIE53_002087	0.48	-0.0
2,338,086	-		ABIE53_002087	0.48	+2.0
2,338,086	-		ABIE53_002087	0.48	-3.0
2,338,124	+		ABIE53_002087	0.50	+1.5
2,338,124	+		ABIE53_002087	0.50	-1.6
2,338,124	+		ABIE53_002087	0.50	-3.8
2,338,125	-		ABIE53_002087	0.50	-0.5
2,338,181	+		ABIE53_002087	0.52	+0.4
2,338,181	+		ABIE53_002087	0.52	+0.7
2,338,182	-		ABIE53_002087	0.52	-2.9
2,338,192	+		ABIE53_002087	0.52	-0.6
2,338,192	+		ABIE53_002087	0.52	-0.5
2,338,235	+		ABIE53_002087	0.54	-1.7
2,338,235	+		ABIE53_002087	0.54	-0.5
2,338,235	+		ABIE53_002087	0.54	+2.7
2,338,235	+		ABIE53_002087	0.54	-0.6
2,338,235	+		ABIE53_002087	0.54	-0.3
2,338,235	+		ABIE53_002087	0.54	-1.2
2,338,236	-		ABIE53_002087	0.54	-1.7
2,338,236	-		ABIE53_002087	0.54	-0.7
2,338,493	+		ABIE53_002087	0.64	-1.4
2,338,493	+		ABIE53_002087	0.64	-2.3
2,338,494	-		ABIE53_002087	0.64	-3.1
2,338,494	-		ABIE53_002087	0.64	+0.1
2,338,494	-		ABIE53_002087	0.64	+0.3
2,338,494	-		ABIE53_002087	0.64	+0.3
2,338,494	-		ABIE53_002087	0.64	+1.3
2,338,494	-		ABIE53_002087	0.64	+1.5
2,338,494	-		ABIE53_002087	0.64	-1.0
2,338,494	-		ABIE53_002087	0.64	-0.7
2,338,591	+		ABIE53_002087	0.68	+2.6
2,338,844	+		ABIE53_002087	0.77	-2.4
2,338,844	+		ABIE53_002087	0.77	-0.8
2,338,845	-		ABIE53_002087	0.77	-1.2
2,338,845	-		ABIE53_002087	0.77	+0.3
2,338,845	-		ABIE53_002087	0.77	-0.9
2,339,023	+		ABIE53_002087	0.84	-0.3
2,339,023	+		ABIE53_002087	0.84	-3.5
2,339,023	+		ABIE53_002087	0.84	-0.7
2,339,023	+		ABIE53_002087	0.84	+2.3
2,339,024	-		ABIE53_002087	0.84	-0.5
2,339,063	+		ABIE53_002087	0.85	-2.2
2,339,064	-		ABIE53_002087	0.85	-3.1
2,339,064	-		ABIE53_002087	0.85	-0.7
2,339,223	+				+1.2
2,339,223	+				-1.2
2,339,223	+				-0.2
2,339,223	+				-1.5
2,339,223	+				+0.2
2,339,223	+				-1.8
2,339,223	+				+1.3
2,339,224	-				-0.0
2,339,224	-				+0.3
2,339,224	-				-0.0
2,339,224	-				+1.0
2,339,432	+				+0.3
2,339,432	+				-1.3
2,339,433	-				+0.7
2,339,433	-				+0.7
2,339,433	-				-0.9
2,339,433	-				+0.4
2,339,433	-				-1.0
2,339,433	-				-2.3
2,339,460	+				-1.2
2,339,460	+				-1.2
2,339,460	+				+2.5
2,339,460	+				+0.8
2,339,460	+				+1.1
2,339,461	-				-0.0
2,339,461	-				-2.3
2,339,530	+				-1.2
2,339,530	+				-1.4
2,339,530	+				-1.0
2,339,530	+				-1.2
2,339,530	+				+0.7
2,339,531	-				+0.3
2,339,549	+				-0.2
2,339,550	-				-0.0
2,339,696	+		ABIE53_002088	0.30	+1.1
2,339,696	+		ABIE53_002088	0.30	+0.2
2,339,696	+		ABIE53_002088	0.30	+2.3
2,339,696	+		ABIE53_002088	0.30	-0.2
2,339,697	-		ABIE53_002088	0.30	-1.3
2,339,697	-		ABIE53_002088	0.30	+1.6
2,339,697	-		ABIE53_002088	0.30	+0.8
2,339,697	-		ABIE53_002088	0.30	+0.5
2,339,703	-		ABIE53_002088	0.32	-1.8
2,339,748	+		ABIE53_002088	0.41	-0.0
2,339,749	-		ABIE53_002088	0.41	-0.8
2,339,749	-		ABIE53_002088	0.41	+1.3
2,339,821	+		ABIE53_002088	0.55	-1.6
2,339,821	+		ABIE53_002088	0.55	-0.3
2,339,821	+		ABIE53_002088	0.55	+3.6
2,339,821	+		ABIE53_002088	0.55	+0.3
2,339,821	+		ABIE53_002088	0.55	+0.3
2,339,821	+		ABIE53_002088	0.55	-1.0
2,339,822	-		ABIE53_002088	0.56	-3.7
2,339,822	-		ABIE53_002088	0.56	-0.2
2,339,822	-		ABIE53_002088	0.56	-1.2
2,339,822	-		ABIE53_002088	0.56	-1.3
2,339,822	-		ABIE53_002088	0.56	-0.9
2,339,822	-		ABIE53_002088	0.56	-2.2
2,339,822	-		ABIE53_002088	0.56	-0.2
2,339,827	+		ABIE53_002088	0.57	-1.0
2,339,827	+		ABIE53_002088	0.57	-1.2
2,339,827	+		ABIE53_002088	0.57	-0.1
2,339,827	+		ABIE53_002088	0.57	-2.9
2,339,827	+		ABIE53_002088	0.57	+4.0
2,339,827	+		ABIE53_002088	0.57	+1.1
2,339,827	+		ABIE53_002088	0.57	-2.0
2,339,828	-		ABIE53_002088	0.57	+0.7
2,339,828	-		ABIE53_002088	0.57	-0.3
2,339,828	-		ABIE53_002088	0.57	-1.3
2,339,828	-		ABIE53_002088	0.57	+0.6
2,339,828	-		ABIE53_002088	0.57	-2.0
2,339,828	-		ABIE53_002088	0.57	-2.2
2,339,828	-		ABIE53_002088	0.57	-1.5
2,339,828	-		ABIE53_002088	0.57	-2.5
2,339,855	+		ABIE53_002088	0.62	-0.5
2,339,855	+		ABIE53_002088	0.62	-1.4
2,339,855	+		ABIE53_002088	0.62	+0.8
2,339,855	+		ABIE53_002088	0.62	-1.2
2,339,856	-		ABIE53_002088	0.63	-1.6
2,339,856	-		ABIE53_002088	0.63	-0.7
2,339,856	-		ABIE53_002088	0.63	-0.7
2,339,973	+		ABIE53_002088	0.86	-3.0
2,339,974	-		ABIE53_002088	0.87	+0.1
2,339,995	-				-1.4
2,340,079	+				-0.3
2,340,079	+				-0.3
2,340,079	+				+0.3
2,340,080	-				-0.3
2,340,080	-				-0.3
2,340,080	-				-0.2
2,340,080	-				-1.7
2,340,080	-				-0.4
2,340,080	-				-0.2
2,340,080	-				-1.6
2,340,080	-				+0.3
2,340,081	+				+0.9
2,340,081	+				-1.1
2,340,082	-				-1.9
2,340,082	-				-0.3
2,340,082	-				+1.0
2,340,082	-				-0.9
2,340,082	-				+1.7
2,340,082	-				-0.3
2,340,086	+				-0.5
2,340,086	+				-1.6
2,340,086	+				-2.2
2,340,086	+				+0.7
2,340,086	+				-0.3
2,340,086	+				-0.7
2,340,086	+				-0.0
2,340,086	+				-3.8
2,340,086	+				+0.7
2,340,086	+				-0.7
2,340,087	-				-0.5
2,340,087	-				-1.3
2,340,087	-				-0.5
2,340,087	-				-0.3
2,340,087	-				-2.5
2,340,087	-				-0.3
2,340,087	-				-1.0
2,340,176	+				-2.3
2,340,176	+				-1.2
2,340,176	+				-1.4
2,340,176	+				-2.8
2,340,204	+				-0.4
2,340,204	+				+1.0
2,340,205	-				-1.9
2,340,205	-				-0.9
2,340,256	+				+0.1
2,340,256	+				-1.3
2,340,256	+				-0.3
2,340,256	+				+1.4
2,340,257	-				-1.6
2,340,257	-				-0.1
2,340,291	+				+0.8
2,340,292	-				+0.3
2,340,292	-				+2.6
2,340,310	+				+0.1
2,340,381	+				-1.0
2,340,381	+				-1.0
2,340,415	+				-0.3