Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001436

Experiment: Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
1,603,546	+				+0.7
1,603,546	+				+0.5
1,603,546	+				+0.4
1,603,546	+				-1.0
1,603,546	+				+1.9
1,603,546	+				-1.3
1,603,546	+				+1.3
1,603,546	+				-0.7
1,603,546	+				-3.6
1,603,546	+				+2.3
1,603,547	-				-1.4
1,603,547	-				+2.4
1,603,547	-				-2.6
1,603,614	+				+0.4
1,603,614	+				-1.3
1,603,614	+				+1.5
1,603,614	+				+2.1
1,603,615	-				-0.7
1,603,615	-				-0.9
1,603,618	+				-1.3
1,603,618	+				-0.5
1,603,618	+				+0.7
1,603,618	+				-0.3
1,603,618	+				-0.2
1,603,618	+				-1.2
1,603,618	+				-0.6
1,603,618	+				-3.1
1,603,618	+				-1.0
1,603,618	+				+1.0
1,603,618	+				-1.5
1,603,618	+				-2.5
1,603,618	+				-0.7
1,603,618	+				-0.0
1,603,618	+				-0.5
1,603,618	+				-1.2
1,603,618	+				-0.7
1,603,618	+				-1.2
1,603,619	-				+1.3
1,603,619	-				-1.6
1,603,619	-				+0.4
1,603,619	-				-0.7
1,603,619	-				+0.1
1,603,619	-				-1.6
1,603,619	-				+0.3
1,603,619	-				-1.4
1,603,619	-				-0.6
1,603,619	-				-2.0
1,603,619	-				-0.3
1,603,619	-				-0.0
1,603,619	-				-0.3
1,603,619	-				+0.3
1,603,649	+		ABIE53_001434	0.12	+0.1
1,603,650	-		ABIE53_001434	0.12	-1.6
1,603,650	-		ABIE53_001434	0.12	-2.0
1,603,821	+		ABIE53_001434	0.81	-1.0
1,603,822	-		ABIE53_001434	0.82	-0.9
1,603,935	+		ABIE53_001435	0.13	-0.7
1,603,936	-		ABIE53_001435	0.13	-0.5
1,603,937	+		ABIE53_001435	0.13	+2.3
1,603,937	+		ABIE53_001435	0.13	-1.5
1,603,937	+		ABIE53_001435	0.13	+0.7
1,603,937	+		ABIE53_001435	0.13	+3.1
1,603,937	+		ABIE53_001435	0.13	-0.2
1,603,938	-		ABIE53_001435	0.13	-1.8
1,603,938	-		ABIE53_001435	0.13	+1.3
1,603,938	-		ABIE53_001435	0.13	-0.3
1,603,998	+		ABIE53_001435	0.30	+2.3
1,603,998	+		ABIE53_001435	0.30	+0.0
1,603,998	+		ABIE53_001435	0.30	+0.8
1,603,998	+		ABIE53_001435	0.30	-0.0
1,603,998	+		ABIE53_001435	0.30	+2.9
1,603,998	+		ABIE53_001435	0.30	-0.0
1,603,998	+		ABIE53_001435	0.30	+0.5
1,603,998	+		ABIE53_001435	0.30	+0.7
1,603,998	+		ABIE53_001435	0.30	+0.3
1,603,998	+		ABIE53_001435	0.30	-2.0
1,603,999	-		ABIE53_001435	0.31	-0.9
1,603,999	-		ABIE53_001435	0.31	+0.0
1,603,999	-		ABIE53_001435	0.31	+1.3
1,603,999	-		ABIE53_001435	0.31	+0.5
1,603,999	-		ABIE53_001435	0.31	-0.7
1,603,999	-		ABIE53_001435	0.31	+0.5
1,603,999	-		ABIE53_001435	0.31	-0.7
1,603,999	-		ABIE53_001435	0.31	-0.3
1,604,034	+		ABIE53_001435	0.40	-0.8
1,604,034	+		ABIE53_001435	0.40	-0.3
1,604,035	-		ABIE53_001435	0.41	-1.6
1,604,035	-		ABIE53_001435	0.41	+3.4
1,604,035	-		ABIE53_001435	0.41	+1.5
1,604,035	-		ABIE53_001435	0.41	+1.3
1,604,105	+		ABIE53_001435	0.60	-2.0
1,604,106	-		ABIE53_001435	0.61	+0.3
1,604,106	-		ABIE53_001435	0.61	+0.3
1,604,106	-		ABIE53_001435	0.61	+0.5
1,604,130	+		ABIE53_001435	0.67	-0.7
1,604,130	+		ABIE53_001435	0.67	+2.9
1,604,131	-		ABIE53_001435	0.68	-0.0
1,604,131	-		ABIE53_001435	0.68	+0.3
1,604,145	+		ABIE53_001435	0.71	-1.5
1,604,145	+		ABIE53_001435	0.71	+1.1
1,604,145	+		ABIE53_001435	0.71	-2.7
1,604,145	+		ABIE53_001435	0.71	-0.2
1,604,145	+		ABIE53_001435	0.71	-1.5
1,604,145	+		ABIE53_001435	0.71	-2.9
1,604,145	+		ABIE53_001435	0.71	+0.4
1,604,146	-		ABIE53_001435	0.72	+0.7
1,604,146	-		ABIE53_001435	0.72	-1.8
1,604,146	-		ABIE53_001435	0.72	+0.5
1,604,146	-		ABIE53_001435	0.72	-0.0
1,604,146	-		ABIE53_001435	0.72	+1.9
1,604,146	-		ABIE53_001435	0.72	-1.7
1,604,146	-		ABIE53_001435	0.72	-3.0
1,604,146	-		ABIE53_001435	0.72	-2.9
1,604,147	+		ABIE53_001435	0.72	-1.3
1,604,147	+		ABIE53_001435	0.72	+1.1
1,604,147	+		ABIE53_001435	0.72	+0.1
1,604,147	+		ABIE53_001435	0.72	+0.3
1,604,147	+		ABIE53_001435	0.72	-1.3
1,604,147	+		ABIE53_001435	0.72	+2.0
1,604,147	+		ABIE53_001435	0.72	+1.3
1,604,147	+		ABIE53_001435	0.72	-1.0
1,604,147	+		ABIE53_001435	0.72	-0.2
1,604,147	+		ABIE53_001435	0.72	-0.0
1,604,147	+		ABIE53_001435	0.72	+0.2
1,604,147	+		ABIE53_001435	0.72	+1.3
1,604,147	+		ABIE53_001435	0.72	-0.5
1,604,147	+		ABIE53_001435	0.72	+2.6
1,604,147	+		ABIE53_001435	0.72	-1.9
1,604,147	+		ABIE53_001435	0.72	-2.3
1,604,148	-		ABIE53_001435	0.72	+0.3
1,604,148	-		ABIE53_001435	0.72	-1.7
1,604,148	-		ABIE53_001435	0.72	+0.6
1,604,148	-		ABIE53_001435	0.72	-0.7
1,604,148	-		ABIE53_001435	0.72	-1.5
1,604,148	-		ABIE53_001435	0.72	-0.8
1,604,148	-		ABIE53_001435	0.72	-1.3
1,604,228	+				-1.5
1,604,228	+				-1.2
1,604,228	+				-0.7
1,604,228	+				+1.4
1,604,228	+				+0.0
1,604,228	+				-2.0
1,604,229	-				-0.5
1,604,229	-				+0.3
1,604,229	-				-0.2
1,604,229	-				+0.7
1,604,231	+				-1.7
1,604,231	+				-0.9
1,604,231	+				-1.2
1,604,231	+				-0.8
1,604,231	+				-0.7
1,604,231	+				-0.0
1,604,232	-				+0.7
1,604,232	-				-1.6
1,604,250	+				+0.5
1,604,250	+				+0.5
1,604,250	+				+0.5
1,604,250	+				+1.3
1,604,251	-				+1.5
1,604,251	-				+0.8
1,604,379	+				-0.7
1,604,379	+				-0.3
1,604,379	+				-2.4
1,604,380	-				+1.3
1,604,380	-				-0.0
1,604,380	-				-2.8
1,604,380	-				+0.3
1,604,382	+				+0.7
1,604,382	+				-0.5
1,604,382	+				+0.0
1,604,382	+				-0.7
1,604,382	+				+2.9
1,604,382	+				-0.0
1,604,382	+				-0.3
1,604,382	+				-0.3
1,604,382	+				-0.4
1,604,382	+				+2.3
1,604,382	+				-1.2
1,604,382	+				+0.8
1,604,383	-				-2.0
1,604,383	-				-1.5
1,604,383	-				+0.3
1,604,383	-				+0.3
1,604,383	-				+0.7
1,604,383	-				+0.5
1,604,383	-				-1.4
1,604,383	-				+0.7
1,604,383	-				-0.7
1,604,383	-				+1.3
1,604,383	-				-2.2
1,604,383	-				-1.7
1,604,383	-				+0.7
1,604,383	-				+0.7
1,604,517	+				+3.1
1,604,517	+				-0.7
1,604,517	+				-1.4
1,604,517	+				-0.9
1,604,517	+				-3.4
1,604,518	-				-1.0
1,604,518	-				-0.3
1,604,518	-				-1.2
1,604,518	-				+0.0
1,604,518	-				-0.2
1,604,589	+				-2.0
1,604,589	+				-0.7
1,604,590	-				-0.3
1,604,590	-				-0.7
1,604,590	-				-1.3
1,604,590	-				-1.4
1,604,590	-				+1.3
1,604,590	-				-2.8
1,604,629	+				-0.8
1,604,629	+				-1.3
1,604,630	-				-1.2
1,604,630	-				+0.7
1,604,706	+		ABIE53_001436	0.10	+1.3
1,604,706	+		ABIE53_001436	0.10	+1.7
1,604,706	+		ABIE53_001436	0.10	-2.8
1,604,706	+		ABIE53_001436	0.10	-0.3
1,604,706	+		ABIE53_001436	0.10	+1.5
1,604,706	+		ABIE53_001436	0.10	+0.3
1,604,706	+		ABIE53_001436	0.10	-0.7
1,604,707	-		ABIE53_001436	0.10	+1.3
1,604,707	-		ABIE53_001436	0.10	-0.7
1,604,707	-		ABIE53_001436	0.10	-1.0
1,604,787	+		ABIE53_001436	0.15	-0.7
1,604,907	+		ABIE53_001436	0.22	-0.9
1,604,907	+		ABIE53_001436	0.22	-1.6
1,604,907	+		ABIE53_001436	0.22	-0.6
1,604,907	+		ABIE53_001436	0.22	-1.3
1,604,907	+		ABIE53_001436	0.22	-1.1
1,604,907	+		ABIE53_001436	0.22	+1.3
1,604,907	+		ABIE53_001436	0.22	+1.4
1,604,907	+		ABIE53_001436	0.22	+0.3
1,604,907	+		ABIE53_001436	0.22	+0.2
1,604,908	-		ABIE53_001436	0.22	+0.3
1,604,908	-		ABIE53_001436	0.22	-1.0
1,604,908	-		ABIE53_001436	0.22	-2.4
1,604,908	-		ABIE53_001436	0.22	+0.7
1,604,908	-		ABIE53_001436	0.22	+0.7
1,604,908	-		ABIE53_001436	0.22	-0.8
1,604,908	-		ABIE53_001436	0.22	+3.3
1,604,937	-		ABIE53_001436	0.24	+1.0
1,604,937	-		ABIE53_001436	0.24	-0.5
1,605,060	+		ABIE53_001436	0.32	-0.0
1,605,060	+		ABIE53_001436	0.32	+1.3
1,605,060	+		ABIE53_001436	0.32	+0.0
1,605,060	+		ABIE53_001436	0.32	+0.6
1,605,060	+		ABIE53_001436	0.32	+0.1
1,605,061	-		ABIE53_001436	0.32	+1.0
1,605,061	-		ABIE53_001436	0.32	+0.7
1,605,061	-		ABIE53_001436	0.32	+0.3
1,605,450	+		ABIE53_001436	0.55	-0.4
1,605,450	+		ABIE53_001436	0.55	+0.7
1,605,450	+		ABIE53_001436	0.55	+0.3
1,605,450	+		ABIE53_001436	0.55	+1.3
1,605,450	+		ABIE53_001436	0.55	-3.1
1,605,450	+		ABIE53_001436	0.55	-1.0
1,605,450	+		ABIE53_001436	0.55	+0.0
1,605,450	+		ABIE53_001436	0.55	+1.2
1,605,451	-		ABIE53_001436	0.55	+0.4
1,605,451	-		ABIE53_001436	0.55	-1.2
1,605,451	-		ABIE53_001436	0.55	-1.5
1,605,618	+		ABIE53_001436	0.65	-0.9
1,605,618	+		ABIE53_001436	0.65	+1.1
1,605,618	+		ABIE53_001436	0.65	-0.4
1,605,618	+		ABIE53_001436	0.65	-0.1
1,605,618	+		ABIE53_001436	0.65	+3.6
1,605,619	-		ABIE53_001436	0.65	-0.4
1,605,619	-		ABIE53_001436	0.65	-2.1
1,605,645	+		ABIE53_001436	0.67	+3.6
1,605,645	+		ABIE53_001436	0.67	+1.3
1,605,645	+		ABIE53_001436	0.67	-0.2
1,605,645	+		ABIE53_001436	0.67	-1.0
1,605,646	-		ABIE53_001436	0.67	-1.5
1,605,646	-		ABIE53_001436	0.67	-0.0
1,605,646	-		ABIE53_001436	0.67	+5.9
1,605,693	+		ABIE53_001436	0.70	-0.4
1,605,693	+		ABIE53_001436	0.70	+0.3
1,605,693	+		ABIE53_001436	0.70	-1.5
1,605,693	+		ABIE53_001436	0.70	+0.4
1,605,693	+		ABIE53_001436	0.70	-0.1
1,605,693	+		ABIE53_001436	0.70	-0.0
1,605,693	+		ABIE53_001436	0.70	-0.0
1,605,693	+		ABIE53_001436	0.70	-0.2
1,605,694	-		ABIE53_001436	0.70	-2.3
1,605,694	-		ABIE53_001436	0.70	-1.7
1,605,694	-		ABIE53_001436	0.70	-0.3
1,605,694	-		ABIE53_001436	0.70	+2.3
1,605,694	-		ABIE53_001436	0.70	+3.5
1,605,694	-		ABIE53_001436	0.70	+0.6
1,605,694	-		ABIE53_001436	0.70	+0.3
1,605,694	-		ABIE53_001436	0.70	-0.9
1,605,694	-		ABIE53_001436	0.70	+0.7
1,605,694	-		ABIE53_001436	0.70	-0.6
1,605,694	-		ABIE53_001436	0.70	-2.8
1,605,694	-		ABIE53_001436	0.70	-0.0
1,605,714	+		ABIE53_001436	0.71	+3.3
1,605,714	+		ABIE53_001436	0.71	+0.0
1,605,715	-		ABIE53_001436	0.71	-0.7
1,605,715	-		ABIE53_001436	0.71	+0.3
1,605,715	-		ABIE53_001436	0.71	+0.7
1,606,015	-		ABIE53_001436	0.89	-0.0
1,606,026	+				-1.4
1,606,026	+				-0.1
1,606,026	+				-1.4
1,606,026	+				+0.6
1,606,026	+				-0.5
1,606,027	-				-0.0
1,606,027	-				-0.2
1,606,027	-				-0.5
1,606,027	-				-2.3
1,606,027	-				-1.0
1,606,132	-				-1.1
1,606,132	-				+0.7
1,606,247	+				-0.1
1,606,247	+				-1.8
1,606,265	+				+0.7
1,606,265	+				-0.5
1,606,265	+				-0.9
1,606,266	-				+0.2
1,606,266	-				+1.6
1,606,266	-				-1.9
1,606,288	+				-0.7
1,606,288	+				-0.5
1,606,288	+				+0.7
1,606,288	+				-1.5
1,606,289	-				+1.7
1,606,289	-				-1.4
1,606,289	-				-3.0
1,606,289	-				-0.5
1,606,289	-				-0.0
1,606,291	+				+0.7
1,606,291	+				+0.7
1,606,291	+				-2.2
1,606,292	-				-0.0
1,606,292	-				+0.3
1,606,292	-				-1.3
1,606,321	-				-0.0
1,606,358	+				-1.0
1,606,358	+				-2.5
1,606,358	+				-1.4
1,606,359	-				-3.2
1,606,504	+		ABIE53_001437	0.16	-0.0
1,606,504	+		ABIE53_001437	0.16	-0.0
1,606,505	-		ABIE53_001437	0.17	-2.6
1,606,678	+		ABIE53_001437	0.29	-0.2
1,606,678	+		ABIE53_001437	0.29	-1.0
1,606,682	+		ABIE53_001437	0.29	+1.3
1,606,682	+		ABIE53_001437	0.29	+0.6
1,606,682	+		ABIE53_001437	0.29	-2.3
1,606,682	+		ABIE53_001437	0.29	-1.7
1,606,682	+		ABIE53_001437	0.29	+1.3
1,606,682	+		ABIE53_001437	0.29	+0.7
1,606,682	+		ABIE53_001437	0.29	-0.9
1,606,682	+		ABIE53_001437	0.29	+0.4
1,606,682	+		ABIE53_001437	0.29	-1.0
1,606,682	+		ABIE53_001437	0.29	-2.1
1,606,683	-		ABIE53_001437	0.29	+1.0
1,606,683	-		ABIE53_001437	0.29	+1.3
1,606,683	-		ABIE53_001437	0.29	-1.9
1,606,683	-		ABIE53_001437	0.29	+1.2
1,606,683	-		ABIE53_001437	0.29	+0.3
1,606,683	-		ABIE53_001437	0.29	+0.1
1,607,068	+		ABIE53_001437	0.56	+0.7
1,607,068	+		ABIE53_001437	0.56	-2.1
1,607,068	+		ABIE53_001437	0.56	-0.5
1,607,068	+		ABIE53_001437	0.56	-0.9
1,607,068	+		ABIE53_001437	0.56	+1.0
1,607,068	+		ABIE53_001437	0.56	+0.3
1,607,068	+		ABIE53_001437	0.56	-0.9
1,607,069	-		ABIE53_001437	0.56	-0.5
1,607,101	+		ABIE53_001437	0.58	-0.3
1,607,101	+		ABIE53_001437	0.58	+3.7
1,607,102	-		ABIE53_001437	0.58	-0.2
1,607,102	-		ABIE53_001437	0.58	-0.1
1,607,121	+		ABIE53_001437	0.59	+0.7
1,607,158	+		ABIE53_001437	0.62	-0.6