Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0283

Experiment: Formate/Acetate-Sulfate (60/1-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmutY and DVU0283 are separated by 334 nucleotidesDVU0283 and ppiB-1 are separated by 261 nucleotidesppiB-1 and hisH are separated by 187 nucleotides DVU0282: mutY - A/G-specific adenine glycosylase (TIGR), at 327,314 to 328,435 mutY DVU0283: DVU0283 - AhpF family protein/thioredoxin reductase (TIGR), at 328,770 to 330,509 DVU0283 DVU0284: ppiB-1 - peptidyl-prolyl cis-trans isomerase B (TIGR), at 330,771 to 331,277 ppiB-1 DVU0285: hisH - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data), at 331,465 to 332,106 hisH Position (kb) 328 329 330 331Strain fitness (log2 ratio) -2 -1 0 1at 327.877 kb on - strand, within mutYat 327.908 kb on - strand, within mutYat 327.960 kb on - strand, within mutYat 327.976 kb on + strand, within mutYat 327.978 kb on + strand, within mutYat 328.025 kb on + strand, within mutYat 328.071 kb on - strand, within mutYat 328.078 kb on + strand, within mutYat 328.078 kb on + strand, within mutYat 328.097 kb on - strand, within mutYat 328.099 kb on + strand, within mutYat 328.107 kb on - strand, within mutYat 328.131 kb on - strand, within mutYat 328.167 kb on - strand, within mutYat 328.199 kb on - strand, within mutYat 328.199 kb on - strand, within mutYat 328.199 kb on - strand, within mutYat 328.254 kb on - strand, within mutYat 328.280 kb on + strand, within mutYat 328.283 kb on - strand, within mutYat 328.322 kb on + strand, within mutYat 328.323 kb on - strandat 328.340 kb on - strandat 328.340 kb on - strandat 328.396 kb on - strandat 328.427 kb on + strandat 328.427 kb on + strandat 328.443 kb on + strandat 328.448 kb on + strandat 328.448 kb on + strandat 328.456 kb on - strandat 328.480 kb on + strandat 328.490 kb on - strandat 328.625 kb on + strandat 328.690 kb on - strandat 328.695 kb on - strandat 328.756 kb on + strandat 328.770 kb on - strandat 328.777 kb on + strandat 328.915 kb on - strandat 328.945 kb on - strand, within DVU0283at 328.971 kb on - strand, within DVU0283at 328.971 kb on - strand, within DVU0283at 329.002 kb on - strand, within DVU0283at 329.022 kb on + strand, within DVU0283at 329.061 kb on + strand, within DVU0283at 329.081 kb on + strand, within DVU0283at 329.089 kb on - strand, within DVU0283at 329.168 kb on - strand, within DVU0283at 329.179 kb on - strand, within DVU0283at 329.188 kb on - strand, within DVU0283at 329.190 kb on + strand, within DVU0283at 329.223 kb on + strand, within DVU0283at 329.288 kb on + strand, within DVU0283at 329.388 kb on + strand, within DVU0283at 329.424 kb on + strand, within DVU0283at 329.429 kb on - strand, within DVU0283at 329.522 kb on + strand, within DVU0283at 329.559 kb on - strand, within DVU0283at 329.601 kb on - strand, within DVU0283at 329.604 kb on + strand, within DVU0283at 329.638 kb on + strand, within DVU0283at 329.638 kb on + strand, within DVU0283at 329.696 kb on + strand, within DVU0283at 329.711 kb on - strand, within DVU0283at 329.727 kb on + strand, within DVU0283at 329.752 kb on + strand, within DVU0283at 329.760 kb on - strand, within DVU0283at 329.796 kb on + strand, within DVU0283at 329.870 kb on + strand, within DVU0283at 329.895 kb on + strand, within DVU0283at 329.993 kb on + strand, within DVU0283at 329.993 kb on + strand, within DVU0283at 329.993 kb on + strand, within DVU0283at 330.001 kb on - strand, within DVU0283at 330.001 kb on - strand, within DVU0283at 330.001 kb on - strand, within DVU0283at 330.020 kb on - strand, within DVU0283at 330.054 kb on - strand, within DVU0283at 330.061 kb on + strand, within DVU0283at 330.086 kb on + strand, within DVU0283at 330.086 kb on + strand, within DVU0283at 330.179 kb on + strand, within DVU0283at 330.179 kb on - strand, within DVU0283at 330.184 kb on + strand, within DVU0283at 330.187 kb on - strand, within DVU0283at 330.289 kb on - strand, within DVU0283at 330.343 kb on + strandat 330.343 kb on + strandat 330.382 kb on - strandat 330.398 kb on + strandat 330.442 kb on - strandat 330.442 kb on - strandat 330.444 kb on - strandat 330.557 kb on - strandat 330.592 kb on - strandat 330.599 kb on + strandat 330.604 kb on + strandat 330.657 kb on + strandat 330.726 kb on - strandat 330.891 kb on - strand, within ppiB-1at 330.910 kb on - strand, within ppiB-1at 330.915 kb on + strand, within ppiB-1at 330.973 kb on + strand, within ppiB-1at 330.989 kb on - strand, within ppiB-1at 331.013 kb on - strand, within ppiB-1at 331.087 kb on - strand, within ppiB-1at 331.109 kb on - strand, within ppiB-1at 331.110 kb on - strand, within ppiB-1at 331.125 kb on + strand, within ppiB-1at 331.131 kb on + strand, within ppiB-1at 331.133 kb on - strand, within ppiB-1at 331.133 kb on - strand, within ppiB-1at 331.196 kb on + strand, within ppiB-1at 331.229 kb on - strandat 331.239 kb on - strandat 331.257 kb on + strandat 331.277 kb on + strandat 331.277 kb on + strandat 331.284 kb on + strandat 331.284 kb on + strandat 331.353 kb on + strandat 331.417 kb on + strandat 331.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM)
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327,877 - mutY DVU0282 0.50 -0.1
327,908 - mutY DVU0282 0.53 -0.7
327,960 - mutY DVU0282 0.58 -0.3
327,976 + mutY DVU0282 0.59 -0.4
327,978 + mutY DVU0282 0.59 +0.0
328,025 + mutY DVU0282 0.63 -0.3
328,071 - mutY DVU0282 0.67 -0.1
328,078 + mutY DVU0282 0.68 -1.1
328,078 + mutY DVU0282 0.68 -0.4
328,097 - mutY DVU0282 0.70 -0.3
328,099 + mutY DVU0282 0.70 -1.0
328,107 - mutY DVU0282 0.71 -1.5
328,131 - mutY DVU0282 0.73 -0.2
328,167 - mutY DVU0282 0.76 -1.3
328,199 - mutY DVU0282 0.79 +1.0
328,199 - mutY DVU0282 0.79 -0.2
328,199 - mutY DVU0282 0.79 -0.5
328,254 - mutY DVU0282 0.84 -0.8
328,280 + mutY DVU0282 0.86 -0.1
328,283 - mutY DVU0282 0.86 -0.3
328,322 + mutY DVU0282 0.90 -0.3
328,323 - +0.7
328,340 - -0.6
328,340 - +0.0
328,396 - -0.0
328,427 + -0.1
328,427 + +0.3
328,443 + -1.0
328,448 + +0.9
328,448 + -1.0
328,456 - +0.3
328,480 + -0.1
328,490 - -0.6
328,625 + +0.4
328,690 - -0.7
328,695 - -0.8
328,756 + +0.4
328,770 - -2.0
328,777 + -0.2
328,915 - +0.9
328,945 - DVU0283 0.10 +0.2
328,971 - DVU0283 0.12 +1.1
328,971 - DVU0283 0.12 -0.0
329,002 - DVU0283 0.13 +1.2
329,022 + DVU0283 0.14 +0.3
329,061 + DVU0283 0.17 -0.0
329,081 + DVU0283 0.18 +0.1
329,089 - DVU0283 0.18 -0.1
329,168 - DVU0283 0.23 -0.1
329,179 - DVU0283 0.24 -0.1
329,188 - DVU0283 0.24 +0.1
329,190 + DVU0283 0.24 -0.4
329,223 + DVU0283 0.26 -0.1
329,288 + DVU0283 0.30 +0.3
329,388 + DVU0283 0.36 +0.4
329,424 + DVU0283 0.38 -0.5
329,429 - DVU0283 0.38 -0.0
329,522 + DVU0283 0.43 -0.5
329,559 - DVU0283 0.45 +0.8
329,601 - DVU0283 0.48 -0.1
329,604 + DVU0283 0.48 +0.1
329,638 + DVU0283 0.50 -0.0
329,638 + DVU0283 0.50 +1.3
329,696 + DVU0283 0.53 -1.1
329,711 - DVU0283 0.54 -0.2
329,727 + DVU0283 0.55 -0.3
329,752 + DVU0283 0.56 +0.1
329,760 - DVU0283 0.57 +0.9
329,796 + DVU0283 0.59 -1.2
329,870 + DVU0283 0.63 -0.7
329,895 + DVU0283 0.65 +0.0
329,993 + DVU0283 0.70 +0.1
329,993 + DVU0283 0.70 +0.3
329,993 + DVU0283 0.70 -0.5
330,001 - DVU0283 0.71 +0.6
330,001 - DVU0283 0.71 +0.1
330,001 - DVU0283 0.71 -0.2
330,020 - DVU0283 0.72 +0.1
330,054 - DVU0283 0.74 +0.5
330,061 + DVU0283 0.74 +1.3
330,086 + DVU0283 0.76 +0.8
330,086 + DVU0283 0.76 -0.3
330,179 + DVU0283 0.81 -0.1
330,179 - DVU0283 0.81 +1.1
330,184 + DVU0283 0.81 +0.5
330,187 - DVU0283 0.81 +0.8
330,289 - DVU0283 0.87 +1.2
330,343 + -1.3
330,343 + -0.2
330,382 - +0.0
330,398 + -0.2
330,442 - +0.8
330,442 - +0.2
330,444 - +0.7
330,557 - -0.0
330,592 - -1.6
330,599 + -0.3
330,604 + -0.3
330,657 + -0.5
330,726 - -0.5
330,891 - ppiB-1 DVU0284 0.24 -0.2
330,910 - ppiB-1 DVU0284 0.27 -0.2
330,915 + ppiB-1 DVU0284 0.28 -0.2
330,973 + ppiB-1 DVU0284 0.40 +0.0
330,989 - ppiB-1 DVU0284 0.43 +0.0
331,013 - ppiB-1 DVU0284 0.48 -0.0
331,087 - ppiB-1 DVU0284 0.62 +0.0
331,109 - ppiB-1 DVU0284 0.67 -0.0
331,110 - ppiB-1 DVU0284 0.67 -0.1
331,125 + ppiB-1 DVU0284 0.70 -0.1
331,131 + ppiB-1 DVU0284 0.71 -0.2
331,133 - ppiB-1 DVU0284 0.71 +0.0
331,133 - ppiB-1 DVU0284 0.71 +0.0
331,196 + ppiB-1 DVU0284 0.84 +1.3
331,229 - -0.0
331,239 - +0.2
331,257 + -1.1
331,277 + +0.2
331,277 + -0.5
331,284 + -0.5
331,284 + -0.2
331,353 + -1.8
331,417 + -0.2
331,495 + -1.7

Or see this region's nucleotide sequence