Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0132 and DVU0133 are separated by 1 nucleotides DVU0133 and DVU0134 are separated by 360 nucleotides
DVU0132: DVU0132 - membrane protein, putative (TIGR), at 168,235 to 169,359
DVU0132
DVU0133: DVU0133 - hypothetical protein (TIGR), at 169,361 to 170,083
DVU0133
DVU0134: DVU0134 - glycosyl transferase, group 2 family protein (TIGR), at 170,444 to 171,481
DVU0134
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.380 kb on + strand, within DVU0132 at 168.403 kb on + strand, within DVU0132 at 168.432 kb on + strand, within DVU0132 at 168.432 kb on + strand, within DVU0132 at 168.440 kb on - strand, within DVU0132 at 168.494 kb on + strand, within DVU0132 at 168.581 kb on - strand, within DVU0132 at 168.603 kb on + strand, within DVU0132 at 168.699 kb on - strand, within DVU0132 at 168.787 kb on - strand, within DVU0132 at 168.924 kb on + strand, within DVU0132 at 168.941 kb on + strand, within DVU0132 at 168.949 kb on - strand, within DVU0132 at 169.038 kb on - strand, within DVU0132 at 169.056 kb on + strand, within DVU0132 at 169.056 kb on + strand, within DVU0132 at 169.064 kb on - strand, within DVU0132 at 169.109 kb on + strand, within DVU0132 at 169.127 kb on - strand, within DVU0132 at 169.127 kb on - strand, within DVU0132 at 169.228 kb on - strand, within DVU0132 at 169.328 kb on - strand at 169.341 kb on + strand at 169.353 kb on + strand at 169.353 kb on + strand at 169.353 kb on + strand at 169.361 kb on - strand at 169.361 kb on - strand at 169.399 kb on + strand at 169.478 kb on + strand, within DVU0133 at 169.483 kb on + strand, within DVU0133 at 169.547 kb on - strand, within DVU0133 at 169.684 kb on + strand, within DVU0133 at 169.684 kb on + strand, within DVU0133 at 169.684 kb on + strand, within DVU0133 at 169.711 kb on - strand, within DVU0133 at 169.714 kb on - strand, within DVU0133 at 169.817 kb on + strand, within DVU0133 at 169.831 kb on + strand, within DVU0133 at 169.831 kb on + strand, within DVU0133 at 169.831 kb on + strand, within DVU0133 at 169.832 kb on + strand, within DVU0133 at 169.839 kb on - strand, within DVU0133 at 169.851 kb on - strand, within DVU0133 at 169.857 kb on - strand, within DVU0133 at 169.998 kb on - strand, within DVU0133 at 170.019 kb on + strand at 170.059 kb on + strand at 170.067 kb on - strand at 170.067 kb on - strand at 170.078 kb on + strand at 170.078 kb on + strand at 170.078 kb on + strand at 170.086 kb on - strand at 170.086 kb on - strand at 170.086 kb on - strand at 170.167 kb on + strand at 170.211 kb on + strand at 170.234 kb on - strand at 170.330 kb on - strand at 170.354 kb on + strand at 170.362 kb on - strand at 170.363 kb on - strand at 170.382 kb on + strand at 170.382 kb on + strand at 170.472 kb on + strand at 170.479 kb on + strand at 170.487 kb on - strand at 170.515 kb on - strand at 170.613 kb on + strand, within DVU0134 at 170.685 kb on + strand, within DVU0134 at 170.698 kb on - strand, within DVU0134 at 170.766 kb on + strand, within DVU0134 at 170.773 kb on + strand, within DVU0134 at 170.843 kb on - strand, within DVU0134 at 170.881 kb on + strand, within DVU0134 at 170.881 kb on + strand, within DVU0134 at 170.894 kb on - strand, within DVU0134 at 170.961 kb on + strand, within DVU0134 at 170.973 kb on + strand, within DVU0134 at 170.987 kb on - strand, within DVU0134 at 170.989 kb on - strand, within DVU0134 at 171.022 kb on + strand, within DVU0134 at 171.030 kb on - strand, within DVU0134 at 171.074 kb on + strand, within DVU0134
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 168,380 + DVU0132 0.13 -2.1 168,403 + DVU0132 0.15 -1.1 168,432 + DVU0132 0.18 -1.8 168,432 + DVU0132 0.18 -0.2 168,440 - DVU0132 0.18 -1.9 168,494 + DVU0132 0.23 -1.4 168,581 - DVU0132 0.31 -3.0 168,603 + DVU0132 0.33 -0.6 168,699 - DVU0132 0.41 -1.3 168,787 - DVU0132 0.49 -1.0 168,924 + DVU0132 0.61 -1.3 168,941 + DVU0132 0.63 -2.7 168,949 - DVU0132 0.63 -0.7 169,038 - DVU0132 0.71 -0.0 169,056 + DVU0132 0.73 +0.1 169,056 + DVU0132 0.73 -0.5 169,064 - DVU0132 0.74 -0.8 169,109 + DVU0132 0.78 -0.9 169,127 - DVU0132 0.79 +0.1 169,127 - DVU0132 0.79 -0.3 169,228 - DVU0132 0.88 -1.4 169,328 - -0.0 169,341 + -0.7 169,353 + -0.8 169,353 + -2.7 169,353 + -0.9 169,361 - -0.8 169,361 - -0.0 169,399 + -0.9 169,478 + DVU0133 0.16 -1.7 169,483 + DVU0133 0.17 -0.7 169,547 - DVU0133 0.26 -0.7 169,684 + DVU0133 0.45 -1.6 169,684 + DVU0133 0.45 -0.1 169,684 + DVU0133 0.45 -0.0 169,711 - DVU0133 0.48 -1.5 169,714 - DVU0133 0.49 -0.7 169,817 + DVU0133 0.63 -1.7 169,831 + DVU0133 0.65 -1.4 169,831 + DVU0133 0.65 -0.9 169,831 + DVU0133 0.65 -1.5 169,832 + DVU0133 0.65 -1.4 169,839 - DVU0133 0.66 -1.0 169,851 - DVU0133 0.68 -1.1 169,857 - DVU0133 0.69 -1.0 169,998 - DVU0133 0.88 -1.0 170,019 + -0.4 170,059 + +0.5 170,067 - -1.2 170,067 - -1.9 170,078 + +0.4 170,078 + +0.1 170,078 + +0.9 170,086 - +0.9 170,086 - +0.4 170,086 - -0.1 170,167 + -0.2 170,211 + -0.1 170,234 - +0.7 170,330 - -0.2 170,354 + -0.5 170,362 - -0.2 170,363 - +0.4 170,382 + -0.6 170,382 + -0.1 170,472 + -0.3 170,479 + +0.7 170,487 - +0.4 170,515 - -0.0 170,613 + DVU0134 0.16 +0.6 170,685 + DVU0134 0.23 -0.7 170,698 - DVU0134 0.24 -0.5 170,766 + DVU0134 0.31 +0.6 170,773 + DVU0134 0.32 +0.2 170,843 - DVU0134 0.38 -1.1 170,881 + DVU0134 0.42 -0.2 170,881 + DVU0134 0.42 +1.3 170,894 - DVU0134 0.43 -0.1 170,961 + DVU0134 0.50 +0.3 170,973 + DVU0134 0.51 +0.2 170,987 - DVU0134 0.52 -0.2 170,989 - DVU0134 0.53 -0.5 171,022 + DVU0134 0.56 -0.5 171,030 - DVU0134 0.56 -0.0 171,074 + DVU0134 0.61 +0.1
Or see this region's nucleotide sequence