Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3031 and DVU3032 overlap by 4 nucleotides DVU3032 and DVU3033 are separated by 3 nucleotides
DVU3031: DVU3031 - conserved hypothetical protein (TIGR), at 3,155,664 to 3,156,755
DVU3031
DVU3032: DVU3032 - conserved hypothetical protein (TIGR), at 3,156,752 to 3,157,381
DVU3032
DVU3033: DVU3033 - iron-sulfur cluster-binding protein (TIGR), at 3,157,385 to 3,159,538
DVU3033
Position (kb)
3156
3157
3158 Strain fitness (log2 ratio)
-1
0
1 at 3155.834 kb on + strand, within DVU3031 at 3155.952 kb on + strand, within DVU3031 at 3155.956 kb on + strand, within DVU3031 at 3155.960 kb on - strand, within DVU3031 at 3156.019 kb on - strand, within DVU3031 at 3156.019 kb on - strand, within DVU3031 at 3156.034 kb on + strand, within DVU3031 at 3156.061 kb on + strand, within DVU3031 at 3156.061 kb on + strand, within DVU3031 at 3156.061 kb on + strand, within DVU3031 at 3156.145 kb on - strand, within DVU3031 at 3156.145 kb on - strand, within DVU3031 at 3156.276 kb on - strand, within DVU3031 at 3156.528 kb on - strand, within DVU3031 at 3156.542 kb on + strand, within DVU3031 at 3156.607 kb on - strand, within DVU3031 at 3156.648 kb on - strand at 3156.656 kb on + strand at 3156.761 kb on + strand at 3156.792 kb on + strand at 3156.832 kb on - strand, within DVU3032 at 3156.863 kb on - strand, within DVU3032 at 3157.002 kb on + strand, within DVU3032 at 3157.049 kb on + strand, within DVU3032 at 3157.143 kb on + strand, within DVU3032 at 3157.235 kb on - strand, within DVU3032 at 3157.288 kb on - strand, within DVU3032 at 3157.342 kb on - strand at 3157.383 kb on - strand at 3157.383 kb on - strand at 3157.383 kb on - strand at 3157.401 kb on - strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.597 kb on + strand at 3157.605 kb on - strand, within DVU3033 at 3157.605 kb on - strand, within DVU3033 at 3157.623 kb on + strand, within DVU3033 at 3157.631 kb on - strand, within DVU3033 at 3157.763 kb on - strand, within DVU3033 at 3157.885 kb on + strand, within DVU3033 at 3157.964 kb on + strand, within DVU3033 at 3158.069 kb on + strand, within DVU3033 at 3158.110 kb on + strand, within DVU3033 at 3158.218 kb on + strand, within DVU3033 at 3158.312 kb on + strand, within DVU3033 at 3158.312 kb on + strand, within DVU3033
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 3,155,834 + DVU3031 0.16 +1.1 3,155,952 + DVU3031 0.26 +0.3 3,155,956 + DVU3031 0.27 -1.6 3,155,960 - DVU3031 0.27 -0.1 3,156,019 - DVU3031 0.33 +0.0 3,156,019 - DVU3031 0.33 -0.0 3,156,034 + DVU3031 0.34 +0.5 3,156,061 + DVU3031 0.36 +0.0 3,156,061 + DVU3031 0.36 +0.5 3,156,061 + DVU3031 0.36 -0.0 3,156,145 - DVU3031 0.44 -0.6 3,156,145 - DVU3031 0.44 -0.4 3,156,276 - DVU3031 0.56 -1.4 3,156,528 - DVU3031 0.79 +0.2 3,156,542 + DVU3031 0.80 +1.3 3,156,607 - DVU3031 0.86 +0.5 3,156,648 - -0.1 3,156,656 + -0.9 3,156,761 + -1.4 3,156,792 + -0.2 3,156,832 - DVU3032 0.13 -0.3 3,156,863 - DVU3032 0.18 -0.2 3,157,002 + DVU3032 0.40 -0.4 3,157,049 + DVU3032 0.47 -0.4 3,157,143 + DVU3032 0.62 -0.3 3,157,235 - DVU3032 0.77 -0.7 3,157,288 - DVU3032 0.85 -1.3 3,157,342 - -0.7 3,157,383 - -1.2 3,157,383 - -0.0 3,157,383 - -0.9 3,157,401 - -0.4 3,157,597 + -0.8 3,157,597 + -0.3 3,157,597 + -0.5 3,157,597 + -0.2 3,157,597 + -1.0 3,157,605 - DVU3033 0.10 -1.1 3,157,605 - DVU3033 0.10 -0.3 3,157,623 + DVU3033 0.11 -0.4 3,157,631 - DVU3033 0.11 +0.4 3,157,763 - DVU3033 0.18 -0.2 3,157,885 + DVU3033 0.23 +0.8 3,157,964 + DVU3033 0.27 -0.6 3,158,069 + DVU3033 0.32 -0.5 3,158,110 + DVU3033 0.34 -0.4 3,158,218 + DVU3033 0.39 -0.5 3,158,312 + DVU3033 0.43 -0.4 3,158,312 + DVU3033 0.43 -0.7
Or see this region's nucleotide sequence