Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2331 and proC are separated by 330 nucleotides proC and ndk overlap by 1 nucleotides ndk and DVU2335 are separated by 551 nucleotides
DVU2331: DVU2331 - Smr family protein (TIGR), at 2,427,033 to 2,428,262
DVU2331
DVU2332: proC - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) , at 2,428,593 to 2,429,390
proC
DVU2333: ndk - nucleoside diphosphate kinase (TIGR), at 2,429,390 to 2,429,809
ndk
DVU2335: DVU2335 - conserved domain protein (TIGR), at 2,430,361 to 2,431,911
DVU2335
Position (kb)
2428
2429
2430 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2427.703 kb on - strand, within DVU2331 at 2427.799 kb on + strand, within DVU2331 at 2427.804 kb on + strand, within DVU2331 at 2427.812 kb on - strand, within DVU2331 at 2427.814 kb on + strand, within DVU2331 at 2427.915 kb on + strand, within DVU2331 at 2427.915 kb on + strand, within DVU2331 at 2427.950 kb on - strand, within DVU2331 at 2428.366 kb on - strand at 2428.467 kb on + strand at 2428.826 kb on - strand, within proC at 2428.842 kb on - strand, within proC at 2428.933 kb on + strand, within proC at 2429.115 kb on + strand, within proC at 2429.612 kb on + strand, within ndk at 2429.658 kb on + strand, within ndk at 2429.666 kb on - strand, within ndk at 2429.666 kb on - strand, within ndk at 2429.706 kb on + strand, within ndk at 2429.712 kb on + strand, within ndk at 2429.859 kb on - strand at 2429.923 kb on + strand at 2430.000 kb on - strand at 2430.069 kb on - strand at 2430.072 kb on + strand at 2430.180 kb on + strand at 2430.227 kb on - strand at 2430.268 kb on - strand at 2430.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 2,427,703 - DVU2331 0.54 -0.1 2,427,799 + DVU2331 0.62 -0.1 2,427,804 + DVU2331 0.63 +0.2 2,427,812 - DVU2331 0.63 -0.5 2,427,814 + DVU2331 0.63 -0.8 2,427,915 + DVU2331 0.72 -1.3 2,427,915 + DVU2331 0.72 +0.7 2,427,950 - DVU2331 0.75 +0.3 2,428,366 - -0.2 2,428,467 + +1.1 2,428,826 - proC DVU2332 0.29 -2.0 2,428,842 - proC DVU2332 0.31 -0.8 2,428,933 + proC DVU2332 0.43 -3.9 2,429,115 + proC DVU2332 0.65 -1.1 2,429,612 + ndk DVU2333 0.53 +0.1 2,429,658 + ndk DVU2333 0.64 +0.0 2,429,666 - ndk DVU2333 0.66 +0.1 2,429,666 - ndk DVU2333 0.66 -0.3 2,429,706 + ndk DVU2333 0.75 +0.2 2,429,712 + ndk DVU2333 0.77 -0.1 2,429,859 - -1.1 2,429,923 + -0.3 2,430,000 - -0.7 2,430,069 - +0.0 2,430,072 + +1.1 2,430,180 + +0.1 2,430,227 - -0.2 2,430,268 - +0.5 2,430,297 + +0.9
Or see this region's nucleotide sequence