Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2063
Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/1-30 mM) |
---|---|---|---|---|---|
remove | |||||
2,140,711 | - | DVU2062 | 0.72 | -0.1 | |
2,140,817 | + | DVU2062 | 0.75 | -0.2 | |
2,140,827 | + | DVU2062 | 0.75 | -0.4 | |
2,140,943 | - | DVU2062 | 0.78 | +0.9 | |
2,141,055 | + | DVU2062 | 0.81 | -1.1 | |
2,141,376 | + | -0.5 | |||
2,141,408 | + | -1.3 | |||
2,141,408 | + | -0.5 | |||
2,141,431 | + | +1.0 | |||
2,141,436 | + | -1.9 | |||
2,141,439 | - | -0.2 | |||
2,141,536 | + | +0.1 | |||
2,141,566 | + | -0.5 | |||
2,141,603 | - | -1.8 | |||
2,141,625 | + | -0.4 | |||
2,141,625 | - | -0.4 | |||
2,141,888 | + | -1.0 | |||
2,142,003 | - | DVU2063 | 0.11 | -0.3 | |
2,142,495 | - | DVU2063 | 0.27 | -1.6 | |
2,142,671 | + | DVU2063 | 0.33 | -0.3 | |
2,142,698 | + | DVU2063 | 0.34 | -0.9 | |
2,143,658 | + | DVU2063 | 0.67 | +0.4 | |
2,143,934 | + | DVU2063 | 0.76 | +0.7 | |
2,144,006 | - | DVU2063 | 0.78 | +0.4 | |
2,144,181 | - | DVU2063 | 0.84 | -0.1 | |
2,144,392 | + | +2.2 | |||
2,144,419 | - | -1.1 |
Or see this region's nucleotide sequence