Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1688 and DVU1690 are separated by 567 nucleotides DVU1690 and DVU1692 are separated by 299 nucleotides DVU1692 and gltX-1 are separated by 170 nucleotides
DVU1688: DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (TIGR), at 1,766,799 to 1,767,608
DVU1688
DVU1690: DVU1690 - transcriptional regulator, TetR family (TIGR), at 1,768,176 to 1,768,745
DVU1690
DVU1692: DVU1692 - hypothetical protein (TIGR), at 1,769,045 to 1,769,440
DVU1692
DVU1693: gltX-1 - glutamyl-tRNA synthetase (TIGR), at 1,769,611 to 1,770,585
gltX-1
Position (kb)
1768
1769 Strain fitness (log2 ratio)
-1
0
1 at 1768.057 kb on - strand at 1768.085 kb on - strand at 1768.127 kb on - strand at 1768.151 kb on - strand at 1768.279 kb on + strand, within DVU1690 at 1768.344 kb on - strand, within DVU1690 at 1768.410 kb on + strand, within DVU1690 at 1768.744 kb on + strand at 1768.763 kb on + strand at 1768.870 kb on + strand at 1768.878 kb on - strand at 1768.943 kb on - strand at 1768.951 kb on - strand at 1769.006 kb on + strand at 1769.351 kb on - strand, within DVU1692 at 1769.392 kb on - strand, within DVU1692 at 1769.458 kb on - strand at 1769.487 kb on + strand at 1769.487 kb on + strand at 1769.495 kb on - strand at 1769.618 kb on + strand at 1769.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 1,768,057 - +1.2 1,768,085 - -0.4 1,768,127 - +0.3 1,768,151 - -1.0 1,768,279 + DVU1690 0.18 -0.5 1,768,344 - DVU1690 0.29 -0.8 1,768,410 + DVU1690 0.41 -0.4 1,768,744 + -0.2 1,768,763 + +0.1 1,768,870 + -0.6 1,768,878 - -1.6 1,768,943 - -0.2 1,768,951 - +0.5 1,769,006 + -0.2 1,769,351 - DVU1692 0.77 -0.2 1,769,392 - DVU1692 0.88 -0.7 1,769,458 - +0.1 1,769,487 + -0.4 1,769,487 + -0.0 1,769,495 - -0.6 1,769,618 + -0.1 1,769,626 - +0.4
Or see this region's nucleotide sequence