Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0821 and DVU0822 are separated by 11 nucleotides DVU0822 and tRNA-Ser are separated by 155 nucleotides tRNA-Ser and argJ are separated by 156 nucleotides
DVU0821: DVU0821 - conserved hypothetical protein (TIGR), at 909,911 to 910,510
DVU0821
DVU0822: DVU0822 - hypothetical protein (TIGR), at 910,522 to 911,178
DVU0822
DVU_tRNA-Ser-3: tRNA-Ser - tRNA with anticodon GCT for Ser (VIMSS-AUTO), at 911,334 to 911,428
tRNA-Ser
DVU0823: argJ - Glutamate N-acetyltransferase (EC 2.3.1.35) <small>(from data)</small>, at 911,585 to 912,766
argJ
Position (kb) 910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 909.530 kb on - strand at 909.569 kb on + strand at 909.623 kb on - strand at 909.701 kb on + strand at 909.723 kb on + strand at 909.731 kb on - strand at 909.731 kb on - strand at 909.800 kb on - strand at 909.859 kb on - strand at 909.939 kb on + strand at 909.942 kb on - strand at 909.947 kb on - strand at 910.143 kb on + strand, within DVU0821 at 910.151 kb on - strand, within DVU0821 at 910.187 kb on - strand, within DVU0821 at 910.619 kb on + strand, within DVU0822 at 910.878 kb on + strand, within DVU0822 at 910.971 kb on - strand, within DVU0822 at 911.587 kb on - strand at 911.661 kb on - strand at 911.719 kb on - strand, within argJ at 911.729 kb on + strand, within argJ at 911.749 kb on - strand, within argJ at 911.761 kb on + strand, within argJ at 911.761 kb on + strand, within argJ at 911.761 kb on + strand, within argJ at 911.960 kb on - strand, within argJ at 912.086 kb on + strand, within argJ at 912.094 kb on - strand, within argJ
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 909,530 - -0.2 909,569 + +0.9 909,623 - +0.2 909,701 + -0.2 909,723 + -0.1 909,731 - +1.0 909,731 - +0.6 909,800 - +0.0 909,859 - +0.0 909,939 + -0.2 909,942 - -0.2 909,947 - -0.1 910,143 + DVU0821 0.39 -0.8 910,151 - DVU0821 0.40 +0.4 910,187 - DVU0821 0.46 -0.4 910,619 + DVU0822 0.15 -1.3 910,878 + DVU0822 0.54 -0.4 910,971 - DVU0822 0.68 -1.5 911,587 - -0.2 911,661 - -0.4 911,719 - argJ DVU0823 0.11 -2.5 911,729 + argJ DVU0823 0.12 -1.2 911,749 - argJ DVU0823 0.14 -1.6 911,761 + argJ DVU0823 0.15 -2.9 911,761 + argJ DVU0823 0.15 -0.9 911,761 + argJ DVU0823 0.15 -0.3 911,960 - argJ DVU0823 0.32 -2.0 912,086 + argJ DVU0823 0.42 -2.6 912,094 - argJ DVU0823 0.43 -2.1
Or see this region's nucleotide sequence