Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acs and DVU0749 are separated by 49 nucleotides DVU0749 and DVU0750 are separated by 290 nucleotides
DVU0748: acs - acetyl-CoA synthetase (TIGR), at 837,106 to 839,052
acs
DVU0749: DVU0749 - DNA-binding response regulator (TIGR), at 839,102 to 840,031
DVU0749
DVU0750: DVU0750 - methyl-accepting chemotaxis protein (TIGR), at 840,322 to 842,331
DVU0750
Position (kb) 839
840
841 Strain fitness (log2 ratio) -1
0
1 at 838.109 kb on - strand, within acs at 838.162 kb on + strand, within acs at 838.202 kb on + strand, within acs at 838.210 kb on - strand, within acs at 838.370 kb on + strand, within acs at 838.430 kb on + strand, within acs at 838.485 kb on + strand, within acs at 838.485 kb on + strand, within acs at 838.547 kb on + strand, within acs at 838.593 kb on - strand, within acs at 838.618 kb on + strand, within acs at 838.714 kb on + strand, within acs at 838.807 kb on - strand, within acs at 838.930 kb on - strand at 838.953 kb on + strand at 838.984 kb on + strand at 839.163 kb on - strand at 839.163 kb on - strand at 839.396 kb on - strand, within DVU0749 at 839.465 kb on - strand, within DVU0749 at 839.469 kb on + strand, within DVU0749 at 839.469 kb on + strand, within DVU0749 at 839.469 kb on + strand, within DVU0749 at 839.487 kb on - strand, within DVU0749 at 839.487 kb on - strand, within DVU0749 at 839.521 kb on + strand, within DVU0749 at 839.543 kb on + strand, within DVU0749 at 839.543 kb on + strand, within DVU0749 at 839.680 kb on + strand, within DVU0749 at 839.681 kb on + strand, within DVU0749 at 839.861 kb on - strand, within DVU0749 at 839.885 kb on + strand, within DVU0749 at 839.885 kb on + strand, within DVU0749 at 839.905 kb on - strand, within DVU0749 at 839.912 kb on - strand, within DVU0749 at 839.932 kb on + strand, within DVU0749 at 839.989 kb on + strand at 840.084 kb on + strand at 840.272 kb on - strand at 840.302 kb on - strand at 840.411 kb on - strand at 840.507 kb on - strand at 840.587 kb on + strand, within DVU0750 at 840.629 kb on - strand, within DVU0750 at 840.629 kb on - strand, within DVU0750 at 840.638 kb on + strand, within DVU0750 at 840.638 kb on + strand, within DVU0750 at 840.645 kb on + strand, within DVU0750 at 840.648 kb on + strand, within DVU0750 at 840.666 kb on - strand, within DVU0750 at 840.666 kb on - strand, within DVU0750 at 840.736 kb on + strand, within DVU0750 at 840.744 kb on - strand, within DVU0750 at 840.744 kb on - strand, within DVU0750 at 840.842 kb on + strand, within DVU0750 at 840.866 kb on + strand, within DVU0750
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 838,109 - acs DVU0748 0.52 -0.5 838,162 + acs DVU0748 0.54 -0.1 838,202 + acs DVU0748 0.56 +0.0 838,210 - acs DVU0748 0.57 -0.4 838,370 + acs DVU0748 0.65 -0.2 838,430 + acs DVU0748 0.68 -0.1 838,485 + acs DVU0748 0.71 +0.5 838,485 + acs DVU0748 0.71 -0.6 838,547 + acs DVU0748 0.74 +0.3 838,593 - acs DVU0748 0.76 -0.9 838,618 + acs DVU0748 0.78 -1.1 838,714 + acs DVU0748 0.83 -1.1 838,807 - acs DVU0748 0.87 -1.3 838,930 - +0.4 838,953 + -0.4 838,984 + -0.4 839,163 - -1.0 839,163 - -0.9 839,396 - DVU0749 0.32 -0.6 839,465 - DVU0749 0.39 -1.5 839,469 + DVU0749 0.39 +0.0 839,469 + DVU0749 0.39 -1.4 839,469 + DVU0749 0.39 -0.7 839,487 - DVU0749 0.41 -0.3 839,487 - DVU0749 0.41 -0.4 839,521 + DVU0749 0.45 -1.6 839,543 + DVU0749 0.47 -1.5 839,543 + DVU0749 0.47 -1.0 839,680 + DVU0749 0.62 -1.5 839,681 + DVU0749 0.62 -1.1 839,861 - DVU0749 0.82 -0.8 839,885 + DVU0749 0.84 -1.0 839,885 + DVU0749 0.84 +0.0 839,905 - DVU0749 0.86 -0.8 839,912 - DVU0749 0.87 -0.3 839,932 + DVU0749 0.89 -0.8 839,989 + +0.5 840,084 + -0.3 840,272 - -0.2 840,302 - -0.0 840,411 - +1.2 840,507 - +0.2 840,587 + DVU0750 0.13 +0.1 840,629 - DVU0750 0.15 -0.0 840,629 - DVU0750 0.15 -0.3 840,638 + DVU0750 0.16 -0.3 840,638 + DVU0750 0.16 +0.1 840,645 + DVU0750 0.16 -0.4 840,648 + DVU0750 0.16 -0.2 840,666 - DVU0750 0.17 +0.1 840,666 - DVU0750 0.17 +0.0 840,736 + DVU0750 0.21 +0.0 840,744 - DVU0750 0.21 -0.3 840,744 - DVU0750 0.21 +1.4 840,842 + DVU0750 0.26 -0.1 840,866 + DVU0750 0.27 +0.8
Or see this region's nucleotide sequence