Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF765
Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/1-30 mM) |
---|---|---|---|---|---|
remove | |||||
127,183 | + | -0.1 | |||
127,196 | - | -0.7 | |||
127,221 | + | -0.4 | |||
127,352 | - | chrB | DVUA0094 | 0.17 | +0.4 |
127,376 | + | chrB | DVUA0094 | 0.19 | -0.1 |
127,400 | - | chrB | DVUA0094 | 0.21 | -0.2 |
127,453 | + | chrB | DVUA0094 | 0.27 | -0.4 |
127,476 | + | chrB | DVUA0094 | 0.29 | -0.7 |
127,580 | - | chrB | DVUA0094 | 0.39 | -0.2 |
127,649 | + | chrB | DVUA0094 | 0.46 | -0.6 |
127,693 | + | chrB | DVUA0094 | 0.50 | -0.3 |
127,743 | - | chrB | DVUA0094 | 0.55 | +0.7 |
127,757 | + | chrB | DVUA0094 | 0.57 | -0.3 |
127,767 | + | chrB | DVUA0094 | 0.58 | -0.4 |
127,898 | + | chrB | DVUA0094 | 0.71 | -1.7 |
127,947 | - | chrB | DVUA0094 | 0.76 | +0.4 |
127,963 | + | chrB | DVUA0094 | 0.77 | +0.0 |
127,980 | + | chrB | DVUA0094 | 0.79 | -0.4 |
128,027 | + | chrB | DVUA0094 | 0.84 | -0.4 |
128,035 | - | chrB | DVUA0094 | 0.84 | -0.3 |
128,172 | - | -0.0 | |||
128,174 | + | -1.3 | |||
128,182 | - | -0.0 | |||
128,182 | - | -0.1 | |||
128,235 | + | DORF765 | 0.19 | -0.6 | |
128,295 | + | DORF765 | 0.38 | -0.2 | |
128,305 | - | DORF765 | 0.41 | -1.2 | |
128,335 | - | DORF765 | 0.51 | -0.3 | |
128,340 | + | DORF765 | 0.52 | -0.2 | |
128,395 | - | DORF765 | 0.70 | -0.8 | |
128,469 | + | -0.4 | |||
128,489 | + | +0.1 | |||
128,502 | + | +0.2 | |||
128,557 | - | -0.4 | |||
128,616 | + | DORF768 | 0.23 | -0.2 | |
128,728 | - | DORF768 | 0.63 | -0.5 | |
128,759 | + | DORF768 | 0.74 | -1.2 | |
128,766 | + | DORF768 | 0.77 | +0.7 | |
128,821 | + | -0.3 | |||
128,855 | + | -0.8 | |||
128,934 | - | -0.5 | |||
128,976 | - | +0.1 | |||
129,092 | + | +0.0 | |||
129,186 | + | +0.1 | |||
129,218 | + | -0.2 | |||
129,232 | - | +0.5 | |||
129,234 | + | -0.2 | |||
129,236 | + | +0.0 | |||
129,241 | + | +0.7 | |||
129,244 | - | -0.2 | |||
129,423 | - | DVUA0096 | 0.21 | -0.3 | |
129,454 | + | DVUA0096 | 0.24 | -0.6 |
Or see this region's nucleotide sequence