Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27945 and BWI76_RS27950 overlap by 4 nucleotides BWI76_RS27950 and BWI76_RS27955 are separated by 243 nucleotides BWI76_RS27955 and BWI76_RS27960 are separated by 114 nucleotides
BWI76_RS27945: BWI76_RS27945 - 2-oxo-3-deoxygalactonate kinase, at 5,795,303 to 5,796,178
_RS27945
BWI76_RS27950: BWI76_RS27950 - transcriptional regulator, at 5,796,175 to 5,796,864
_RS27950
BWI76_RS27955: BWI76_RS27955 - sugar-phosphatase, at 5,797,108 to 5,797,920
_RS27955
BWI76_RS27960: BWI76_RS27960 - alcohol dehydrogenase protein, at 5,798,035 to 5,799,060
_RS27960
Position (kb) 5797
5798 Strain fitness (log2 ratio) -2
-1
0
1 at 5796.152 kb on + strand at 5796.328 kb on - strand, within BWI76_RS27950 at 5796.356 kb on - strand, within BWI76_RS27950 at 5796.381 kb on + strand, within BWI76_RS27950 at 5796.791 kb on - strand, within BWI76_RS27950 at 5796.828 kb on + strand at 5796.860 kb on + strand at 5796.891 kb on - strand at 5797.154 kb on + strand at 5797.207 kb on + strand, within BWI76_RS27955 at 5797.460 kb on + strand, within BWI76_RS27955 at 5797.460 kb on + strand, within BWI76_RS27955 at 5797.468 kb on - strand, within BWI76_RS27955 at 5797.544 kb on - strand, within BWI76_RS27955 at 5797.603 kb on - strand, within BWI76_RS27955 at 5797.662 kb on - strand, within BWI76_RS27955 at 5797.701 kb on + strand, within BWI76_RS27955 at 5797.795 kb on + strand, within BWI76_RS27955 at 5797.942 kb on + strand at 5798.090 kb on - strand at 5798.318 kb on - strand, within BWI76_RS27960 at 5798.396 kb on - strand, within BWI76_RS27960 at 5798.396 kb on - strand, within BWI76_RS27960 at 5798.410 kb on - strand, within BWI76_RS27960 at 5798.579 kb on + strand, within BWI76_RS27960 at 5798.612 kb on + strand, within BWI76_RS27960 at 5798.617 kb on + strand, within BWI76_RS27960 at 5798.624 kb on + strand, within BWI76_RS27960 at 5798.632 kb on - strand, within BWI76_RS27960
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 5,796,152 + -1.0 5,796,328 - BWI76_RS27950 0.22 +1.4 5,796,356 - BWI76_RS27950 0.26 -1.3 5,796,381 + BWI76_RS27950 0.30 -0.1 5,796,791 - BWI76_RS27950 0.89 +0.2 5,796,828 + -0.9 5,796,860 + +0.0 5,796,891 - -0.2 5,797,154 + +0.1 5,797,207 + BWI76_RS27955 0.12 -0.2 5,797,460 + BWI76_RS27955 0.43 -0.8 5,797,460 + BWI76_RS27955 0.43 -2.7 5,797,468 - BWI76_RS27955 0.44 -0.1 5,797,544 - BWI76_RS27955 0.54 +0.6 5,797,603 - BWI76_RS27955 0.61 -0.5 5,797,662 - BWI76_RS27955 0.68 -0.1 5,797,701 + BWI76_RS27955 0.73 -0.2 5,797,795 + BWI76_RS27955 0.85 +0.1 5,797,942 + -0.5 5,798,090 - +1.6 5,798,318 - BWI76_RS27960 0.28 -0.4 5,798,396 - BWI76_RS27960 0.35 +0.8 5,798,396 - BWI76_RS27960 0.35 -1.2 5,798,410 - BWI76_RS27960 0.37 -0.3 5,798,579 + BWI76_RS27960 0.53 -1.1 5,798,612 + BWI76_RS27960 0.56 -1.6 5,798,617 + BWI76_RS27960 0.57 +0.6 5,798,624 + BWI76_RS27960 0.57 -0.8 5,798,632 - BWI76_RS27960 0.58 +0.5
Or see this region's nucleotide sequence