Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03810 and BWI76_RS03815 are separated by 11 nucleotides BWI76_RS03815 and BWI76_RS03820 are separated by 109 nucleotides
BWI76_RS03810: BWI76_RS03810 - GTPase, at 787,632 to 788,588
_RS03810
BWI76_RS03815: BWI76_RS03815 - hypothetical protein, at 788,600 to 788,803
_RS03815
BWI76_RS03820: BWI76_RS03820 - carbon starvation protein A, at 788,913 to 791,063
_RS03820
Position (kb) 788
789 Strain fitness (log2 ratio) -2
-1
0
1
2 at 787.738 kb on - strand, within BWI76_RS03810 at 787.850 kb on + strand, within BWI76_RS03810 at 788.073 kb on - strand, within BWI76_RS03810 at 788.075 kb on - strand, within BWI76_RS03810 at 788.199 kb on + strand, within BWI76_RS03810 at 788.286 kb on - strand, within BWI76_RS03810 at 788.320 kb on - strand, within BWI76_RS03810 at 788.365 kb on + strand, within BWI76_RS03810 at 788.413 kb on + strand, within BWI76_RS03810 at 788.421 kb on - strand, within BWI76_RS03810 at 788.423 kb on + strand, within BWI76_RS03810 at 788.524 kb on - strand at 788.590 kb on - strand at 788.697 kb on + strand, within BWI76_RS03815 at 788.707 kb on + strand, within BWI76_RS03815 at 788.831 kb on + strand at 788.844 kb on + strand at 788.852 kb on - strand at 788.891 kb on - strand at 788.992 kb on - strand at 789.068 kb on - strand at 789.076 kb on + strand at 789.199 kb on + strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.240 kb on - strand, within BWI76_RS03820 at 789.302 kb on + strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.518 kb on + strand, within BWI76_RS03820 at 789.681 kb on + strand, within BWI76_RS03820 at 789.689 kb on - strand, within BWI76_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 787,738 - BWI76_RS03810 0.11 +1.8 787,850 + BWI76_RS03810 0.23 +0.3 788,073 - BWI76_RS03810 0.46 +0.1 788,075 - BWI76_RS03810 0.46 -0.4 788,199 + BWI76_RS03810 0.59 +0.3 788,286 - BWI76_RS03810 0.68 +2.6 788,320 - BWI76_RS03810 0.72 +0.1 788,365 + BWI76_RS03810 0.77 +0.7 788,413 + BWI76_RS03810 0.82 -0.8 788,421 - BWI76_RS03810 0.82 -0.5 788,423 + BWI76_RS03810 0.83 +0.1 788,524 - -0.2 788,590 - -0.4 788,697 + BWI76_RS03815 0.48 -1.2 788,707 + BWI76_RS03815 0.52 -1.9 788,831 + +0.4 788,844 + -0.8 788,852 - +0.6 788,891 - +0.5 788,992 - +0.6 789,068 - +0.4 789,076 + +0.1 789,199 + BWI76_RS03820 0.13 -0.1 789,207 - BWI76_RS03820 0.14 +0.2 789,207 - BWI76_RS03820 0.14 +0.3 789,207 - BWI76_RS03820 0.14 -0.0 789,240 - BWI76_RS03820 0.15 +0.6 789,302 + BWI76_RS03820 0.18 -0.6 789,310 - BWI76_RS03820 0.18 -1.3 789,310 - BWI76_RS03820 0.18 +0.2 789,310 - BWI76_RS03820 0.18 +0.4 789,518 + BWI76_RS03820 0.28 +2.3 789,681 + BWI76_RS03820 0.36 -0.3 789,689 - BWI76_RS03820 0.36 +0.4
Or see this region's nucleotide sequence