Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00415 and BWI76_RS00420 overlap by 7 nucleotides BWI76_RS00420 and BWI76_RS00425 overlap by 4 nucleotides BWI76_RS00425 and BWI76_RS00430 are separated by 44 nucleotides
BWI76_RS00415: BWI76_RS00415 - glucose-1-phosphatase, at 87,279 to 87,878
_RS00415
BWI76_RS00420: BWI76_RS00420 - hypothetical protein, at 87,872 to 88,732
_RS00420
BWI76_RS00425: BWI76_RS00425 - D-tyrosyl-tRNA(Tyr) deacylase, at 88,729 to 89,166
_RS00425
BWI76_RS00430: BWI76_RS00430 - GNAT family N-acetyltransferase, at 89,211 to 90,152
_RS00430
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1 at 87.772 kb on - strand, within BWI76_RS00415 at 87.796 kb on + strand, within BWI76_RS00415 at 87.804 kb on - strand, within BWI76_RS00415 at 87.882 kb on - strand at 88.062 kb on + strand, within BWI76_RS00420 at 88.140 kb on + strand, within BWI76_RS00420 at 88.295 kb on - strand, within BWI76_RS00420 at 88.316 kb on - strand, within BWI76_RS00420 at 88.464 kb on + strand, within BWI76_RS00420 at 88.464 kb on - strand, within BWI76_RS00420 at 88.472 kb on - strand, within BWI76_RS00420 at 88.484 kb on - strand, within BWI76_RS00420 at 88.523 kb on + strand, within BWI76_RS00420 at 88.531 kb on - strand, within BWI76_RS00420 at 88.599 kb on - strand, within BWI76_RS00420 at 88.648 kb on + strand at 88.736 kb on + strand at 89.025 kb on + strand, within BWI76_RS00425 at 89.025 kb on + strand, within BWI76_RS00425 at 89.046 kb on - strand, within BWI76_RS00425 at 89.216 kb on - strand at 89.390 kb on + strand, within BWI76_RS00430 at 89.453 kb on + strand, within BWI76_RS00430 at 89.461 kb on - strand, within BWI76_RS00430 at 89.638 kb on + strand, within BWI76_RS00430 at 89.817 kb on - strand, within BWI76_RS00430 at 89.870 kb on - strand, within BWI76_RS00430 at 89.872 kb on + strand, within BWI76_RS00430 at 90.050 kb on + strand, within BWI76_RS00430
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM remove 87,772 - BWI76_RS00415 0.82 -0.8 87,796 + BWI76_RS00415 0.86 +0.2 87,804 - BWI76_RS00415 0.88 +1.0 87,882 - +0.1 88,062 + BWI76_RS00420 0.22 +1.4 88,140 + BWI76_RS00420 0.31 +0.8 88,295 - BWI76_RS00420 0.49 +0.0 88,316 - BWI76_RS00420 0.52 +0.9 88,464 + BWI76_RS00420 0.69 -0.5 88,464 - BWI76_RS00420 0.69 -0.6 88,472 - BWI76_RS00420 0.70 -0.9 88,484 - BWI76_RS00420 0.71 -0.1 88,523 + BWI76_RS00420 0.76 -0.1 88,531 - BWI76_RS00420 0.77 +0.2 88,599 - BWI76_RS00420 0.84 +0.1 88,648 + -1.0 88,736 + +0.2 89,025 + BWI76_RS00425 0.68 -1.2 89,025 + BWI76_RS00425 0.68 -0.9 89,046 - BWI76_RS00425 0.72 -0.5 89,216 - +1.6 89,390 + BWI76_RS00430 0.19 -0.1 89,453 + BWI76_RS00430 0.26 -0.6 89,461 - BWI76_RS00430 0.27 +0.1 89,638 + BWI76_RS00430 0.45 +0.3 89,817 - BWI76_RS00430 0.64 +0.3 89,870 - BWI76_RS00430 0.70 -1.0 89,872 + BWI76_RS00430 0.70 -0.7 90,050 + BWI76_RS00430 0.89 -0.0
Or see this region's nucleotide sequence