Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2930

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2929 and DvMF_2930 are separated by 153 nucleotidesDvMF_2930 and DvMF_2931 are separated by 330 nucleotides DvMF_2929: DvMF_2929 - hydroxypyruvate isomerase (RefSeq), at 3,700,524 to 3,701,315 _2929 DvMF_2930: DvMF_2930 - transcriptional regulator, GntR family (RefSeq), at 3,701,469 to 3,702,350 _2930 DvMF_2931: DvMF_2931 - elongation factor G (RefSeq), at 3,702,681 to 3,704,747 _2931 Position (kb) 3701 3702 3703Strain fitness (log2 ratio) -1 0 1at 3700.530 kb on - strandat 3701.037 kb on - strand, within DvMF_2929at 3701.060 kb on - strand, within DvMF_2929at 3701.088 kb on - strand, within DvMF_2929at 3701.159 kb on - strand, within DvMF_2929at 3701.321 kb on + strandat 3701.360 kb on - strandat 3701.431 kb on - strandat 3701.476 kb on + strandat 3701.597 kb on + strand, within DvMF_2930at 3701.605 kb on - strand, within DvMF_2930at 3701.624 kb on + strand, within DvMF_2930at 3702.089 kb on + strand, within DvMF_2930at 3702.161 kb on - strand, within DvMF_2930at 3702.263 kb on - strandat 3702.661 kb on - strandat 3702.824 kb on - strandat 3702.987 kb on + strand, within DvMF_2931at 3703.293 kb on + strand, within DvMF_2931

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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3,700,530 - -0.9
3,701,037 - DvMF_2929 0.65 +0.6
3,701,060 - DvMF_2929 0.68 -0.8
3,701,088 - DvMF_2929 0.71 -0.2
3,701,159 - DvMF_2929 0.80 -0.8
3,701,321 + -0.3
3,701,360 - -0.7
3,701,431 - -0.7
3,701,476 + -0.2
3,701,597 + DvMF_2930 0.15 -0.1
3,701,605 - DvMF_2930 0.15 -0.1
3,701,624 + DvMF_2930 0.18 +0.1
3,702,089 + DvMF_2930 0.70 -0.4
3,702,161 - DvMF_2930 0.78 -0.7
3,702,263 - -0.6
3,702,661 - -1.4
3,702,824 - -1.2
3,702,987 + DvMF_2931 0.15 -1.0
3,703,293 + DvMF_2931 0.30 -1.4

Or see this region's nucleotide sequence