Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2771

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2769 and DvMF_2770 are separated by 232 nucleotidesDvMF_2770 and DvMF_2771 are separated by 99 nucleotidesDvMF_2771 and DvMF_2772 are separated by 224 nucleotides DvMF_2769: DvMF_2769 - phosphoribosylglycinamide formyltransferase (RefSeq), at 3,503,125 to 3,503,808 _2769 DvMF_2770: DvMF_2770 - no description, at 3,504,041 to 3,504,124 _2770 DvMF_2771: DvMF_2771 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,504,224 to 3,504,835 _2771 DvMF_2772: DvMF_2772 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 3,505,060 to 3,507,498 _2772 Position (kb) 3504 3505Strain fitness (log2 ratio) -1 0 1at 3503.327 kb on + strand, within DvMF_2769at 3503.521 kb on - strand, within DvMF_2769at 3503.536 kb on - strand, within DvMF_2769at 3503.739 kb on + strand, within DvMF_2769at 3503.741 kb on + strandat 3504.072 kb on - strand, within DvMF_2770at 3504.180 kb on + strandat 3504.237 kb on - strandat 3504.335 kb on + strand, within DvMF_2771at 3504.343 kb on - strand, within DvMF_2771at 3504.343 kb on - strand, within DvMF_2771at 3504.400 kb on - strand, within DvMF_2771at 3504.400 kb on - strand, within DvMF_2771at 3504.486 kb on - strand, within DvMF_2771at 3504.600 kb on + strand, within DvMF_2771at 3504.899 kb on + strandat 3504.943 kb on - strandat 3504.948 kb on - strandat 3504.948 kb on - strandat 3504.977 kb on - strandat 3505.131 kb on + strandat 3505.158 kb on - strandat 3505.182 kb on - strandat 3505.421 kb on + strand, within DvMF_2772at 3505.443 kb on + strand, within DvMF_2772at 3505.509 kb on - strand, within DvMF_2772at 3505.559 kb on - strand, within DvMF_2772at 3505.661 kb on - strand, within DvMF_2772at 3505.676 kb on - strand, within DvMF_2772

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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3,503,327 + DvMF_2769 0.30 +0.2
3,503,521 - DvMF_2769 0.58 -0.7
3,503,536 - DvMF_2769 0.60 -0.7
3,503,739 + DvMF_2769 0.90 +0.8
3,503,741 + -1.4
3,504,072 - DvMF_2770 0.37 +0.5
3,504,180 + -0.3
3,504,237 - -0.1
3,504,335 + DvMF_2771 0.18 +0.0
3,504,343 - DvMF_2771 0.19 +0.2
3,504,343 - DvMF_2771 0.19 -0.2
3,504,400 - DvMF_2771 0.29 +0.0
3,504,400 - DvMF_2771 0.29 -0.3
3,504,486 - DvMF_2771 0.43 -0.7
3,504,600 + DvMF_2771 0.61 -0.7
3,504,899 + -0.2
3,504,943 - -0.3
3,504,948 - -0.8
3,504,948 - -0.6
3,504,977 - -1.1
3,505,131 + -0.4
3,505,158 - -0.4
3,505,182 - +0.8
3,505,421 + DvMF_2772 0.15 -0.3
3,505,443 + DvMF_2772 0.16 +0.2
3,505,509 - DvMF_2772 0.18 -0.4
3,505,559 - DvMF_2772 0.20 +0.1
3,505,661 - DvMF_2772 0.25 -0.8
3,505,676 - DvMF_2772 0.25 +0.1

Or see this region's nucleotide sequence