Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2447

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2446 and DvMF_2447 overlap by 10 nucleotidesDvMF_2447 and DvMF_2448 are separated by 260 nucleotides DvMF_2446: DvMF_2446 - phenylacetate-coenzyme A ligase, putative (RefSeq), at 3,079,866 to 3,081,131 _2446 DvMF_2447: DvMF_2447 - protein of unknown function DUF399 (RefSeq), at 3,081,122 to 3,082,807 _2447 DvMF_2448: DvMF_2448 - CopG domain protein DNA-binding domain protein (RefSeq), at 3,083,068 to 3,083,475 _2448 Position (kb) 3081 3082 3083Strain fitness (log2 ratio) -1 0 1at 3081.150 kb on - strandat 3081.267 kb on + strandat 3081.349 kb on - strand, within DvMF_2447at 3081.619 kb on + strand, within DvMF_2447at 3081.973 kb on - strand, within DvMF_2447at 3082.036 kb on - strand, within DvMF_2447at 3082.230 kb on + strand, within DvMF_2447at 3082.314 kb on - strand, within DvMF_2447at 3082.476 kb on + strand, within DvMF_2447at 3082.740 kb on + strandat 3082.875 kb on + strandat 3082.971 kb on - strandat 3083.045 kb on + strandat 3083.086 kb on - strandat 3083.162 kb on + strand, within DvMF_2448at 3083.321 kb on + strand, within DvMF_2448at 3083.345 kb on + strand, within DvMF_2448at 3083.350 kb on + strand, within DvMF_2448at 3083.363 kb on - strand, within DvMF_2448

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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3,081,150 - -1.0
3,081,267 + +0.2
3,081,349 - DvMF_2447 0.13 -1.1
3,081,619 + DvMF_2447 0.29 -0.3
3,081,973 - DvMF_2447 0.50 -0.6
3,082,036 - DvMF_2447 0.54 -1.0
3,082,230 + DvMF_2447 0.66 -0.7
3,082,314 - DvMF_2447 0.71 -0.2
3,082,476 + DvMF_2447 0.80 -0.2
3,082,740 + -0.9
3,082,875 + -0.3
3,082,971 - +0.1
3,083,045 + -0.6
3,083,086 - -0.5
3,083,162 + DvMF_2448 0.23 -0.8
3,083,321 + DvMF_2448 0.62 -0.3
3,083,345 + DvMF_2448 0.68 -0.4
3,083,350 + DvMF_2448 0.69 -0.6
3,083,363 - DvMF_2448 0.72 -0.9

Or see this region's nucleotide sequence