Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1220

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1219 and DvMF_1220 are separated by 122 nucleotidesDvMF_1220 and DvMF_1221 are separated by 429 nucleotides DvMF_1219: DvMF_1219 - transposase, putative (RefSeq), at 1,501,977 to 1,502,900 _1219 DvMF_1220: DvMF_1220 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,503,023 to 1,503,805 _1220 DvMF_1221: DvMF_1221 - Extracellular ligand-binding receptor (RefSeq), at 1,504,235 to 1,505,653 _1221 Position (kb) 1503 1504Strain fitness (log2 ratio) -2 -1 0 1at 1502.790 kb on - strand, within DvMF_1219at 1502.841 kb on + strandat 1502.921 kb on - strandat 1503.002 kb on - strandat 1503.109 kb on + strand, within DvMF_1220at 1503.136 kb on + strand, within DvMF_1220at 1503.207 kb on + strand, within DvMF_1220at 1503.406 kb on - strand, within DvMF_1220at 1503.485 kb on - strand, within DvMF_1220at 1503.623 kb on - strand, within DvMF_1220at 1503.813 kb on + strandat 1503.813 kb on + strandat 1503.999 kb on + strandat 1504.018 kb on + strandat 1504.018 kb on + strandat 1504.026 kb on - strandat 1504.026 kb on - strandat 1504.446 kb on + strand, within DvMF_1221at 1504.793 kb on + strand, within DvMF_1221

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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1,502,790 - DvMF_1219 0.88 -0.2
1,502,841 + -0.6
1,502,921 - -0.2
1,503,002 - -0.8
1,503,109 + DvMF_1220 0.11 -0.4
1,503,136 + DvMF_1220 0.14 -0.5
1,503,207 + DvMF_1220 0.23 -1.0
1,503,406 - DvMF_1220 0.49 -0.5
1,503,485 - DvMF_1220 0.59 -0.9
1,503,623 - DvMF_1220 0.77 -0.9
1,503,813 + -2.0
1,503,813 + -1.5
1,503,999 + -0.4
1,504,018 + -1.2
1,504,018 + +0.5
1,504,026 - -0.5
1,504,026 - -0.7
1,504,446 + DvMF_1221 0.15 +0.9
1,504,793 + DvMF_1221 0.39 -0.2

Or see this region's nucleotide sequence