Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0972

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsI and aroK are separated by 259 nucleotidesaroK and DvMF_0972 are separated by 1 nucleotidesDvMF_0972 and DvMF_0973 are separated by 118 nucleotidesDvMF_0973 and DvMF_0974 are separated by 284 nucleotides DvMF_0970: rpsI - 30S ribosomal protein S9 (RefSeq), at 1,177,033 to 1,177,425 rpsI DvMF_0971: aroK - Homoserine kinase (EC:2.7.1.39) (from data), at 1,177,685 to 1,178,242 aroK DvMF_0972: DvMF_0972 - hypothetical protein (RefSeq), at 1,178,244 to 1,178,981 _0972 DvMF_0973: DvMF_0973 - putative lipoprotein (RefSeq), at 1,179,100 to 1,179,660 _0973 DvMF_0974: DvMF_0974 - transcriptional regulator, MucR family (RefSeq), at 1,179,945 to 1,180,343 _0974 Position (kb) 1178 1179Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1177.553 kb on - strandat 1177.772 kb on + strand, within aroKat 1177.891 kb on - strand, within aroKat 1177.969 kb on - strand, within aroKat 1178.494 kb on + strand, within DvMF_0972at 1178.879 kb on + strand, within DvMF_0972at 1179.218 kb on + strand, within DvMF_0973at 1179.276 kb on + strand, within DvMF_0973at 1179.351 kb on + strand, within DvMF_0973at 1179.351 kb on + strand, within DvMF_0973at 1179.402 kb on + strand, within DvMF_0973at 1179.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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1,177,553 - -0.1
1,177,772 + aroK DvMF_0971 0.16 -4.1
1,177,891 - aroK DvMF_0971 0.37 -5.1
1,177,969 - aroK DvMF_0971 0.51 -3.2
1,178,494 + DvMF_0972 0.34 -0.5
1,178,879 + DvMF_0972 0.86 -0.1
1,179,218 + DvMF_0973 0.21 +0.5
1,179,276 + DvMF_0973 0.31 -1.2
1,179,351 + DvMF_0973 0.45 -1.2
1,179,351 + DvMF_0973 0.45 -1.0
1,179,402 + DvMF_0973 0.54 -1.9
1,179,808 + -0.7

Or see this region's nucleotide sequence