Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0520 and csrA are separated by 13 nucleotides csrA and yviF overlap by 22 nucleotides yviF and flgM are separated by 350 nucleotides flgM and DVU0524 are separated by 25 nucleotides
DVU0520: DVU0520 - flagellar hook-associated protein FlgL, putative (TIGR), at 594,622 to 596,193
DVU0520
DVU0521: csrA - carbon storage regulator (TIGR), at 596,207 to 596,443
csrA
DVU0522: yviF - conserved hypothetical protein (TIGR), at 596,422 to 596,943
yviF
DVU0523: flgM - negative regulator of flagellin synthesis FlgM (TIGR), at 597,294 to 597,608
flgM
DVU0524: DVU0524 - hypothetical protein (TIGR), at 597,634 to 598,050
DVU0524
Position (kb) 596
597 Strain fitness (log2 ratio) -1
0
1
2
3 at 595.466 kb on + strand, within DVU0520 at 595.476 kb on - strand, within DVU0520 at 595.510 kb on - strand, within DVU0520 at 595.564 kb on + strand, within DVU0520 at 595.622 kb on + strand, within DVU0520 at 595.699 kb on + strand, within DVU0520 at 595.739 kb on + strand, within DVU0520 at 595.796 kb on - strand, within DVU0520 at 595.802 kb on - strand, within DVU0520 at 595.826 kb on - strand, within DVU0520 at 595.864 kb on + strand, within DVU0520 at 595.920 kb on + strand, within DVU0520 at 595.935 kb on - strand, within DVU0520 at 595.935 kb on - strand, within DVU0520 at 596.027 kb on - strand, within DVU0520 at 596.029 kb on - strand, within DVU0520 at 596.106 kb on - strand at 596.128 kb on + strand at 596.187 kb on + strand at 596.228 kb on - strand at 596.285 kb on - strand, within csrA at 596.353 kb on - strand, within csrA at 596.394 kb on + strand, within csrA at 596.397 kb on - strand, within csrA at 596.469 kb on + strand at 596.486 kb on + strand, within yviF at 596.507 kb on + strand, within yviF at 596.610 kb on + strand, within yviF at 596.686 kb on + strand, within yviF at 596.694 kb on + strand, within yviF at 596.756 kb on + strand, within yviF at 596.771 kb on + strand, within yviF at 596.938 kb on + strand at 596.938 kb on + strand at 597.143 kb on - strand at 597.164 kb on - strand at 597.259 kb on + strand at 597.267 kb on - strand at 597.327 kb on - strand, within flgM at 597.436 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.560 kb on + strand, within flgM at 597.573 kb on - strand, within flgM at 597.582 kb on - strand at 597.677 kb on + strand, within DVU0524 at 597.690 kb on - strand, within DVU0524 at 597.774 kb on + strand, within DVU0524 at 597.776 kb on + strand, within DVU0524 at 597.813 kb on - strand, within DVU0524 at 597.830 kb on + strand, within DVU0524
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 595,466 + DVU0520 0.54 +0.9 595,476 - DVU0520 0.54 +1.7 595,510 - DVU0520 0.56 +1.0 595,564 + DVU0520 0.60 +1.0 595,622 + DVU0520 0.64 +1.1 595,699 + DVU0520 0.69 -0.1 595,739 + DVU0520 0.71 +2.2 595,796 - DVU0520 0.75 +1.2 595,802 - DVU0520 0.75 +1.5 595,826 - DVU0520 0.77 +1.6 595,864 + DVU0520 0.79 +0.8 595,920 + DVU0520 0.83 +1.7 595,935 - DVU0520 0.84 +1.5 595,935 - DVU0520 0.84 +2.7 596,027 - DVU0520 0.89 +1.5 596,029 - DVU0520 0.90 +1.1 596,106 - +0.8 596,128 + +0.5 596,187 + -0.5 596,228 - -1.3 596,285 - csrA DVU0521 0.33 -0.7 596,353 - csrA DVU0521 0.62 +0.4 596,394 + csrA DVU0521 0.79 +0.8 596,397 - csrA DVU0521 0.80 +0.2 596,469 + +0.7 596,486 + yviF DVU0522 0.12 +2.8 596,507 + yviF DVU0522 0.16 +1.3 596,610 + yviF DVU0522 0.36 +1.1 596,686 + yviF DVU0522 0.51 +1.8 596,694 + yviF DVU0522 0.52 +1.1 596,756 + yviF DVU0522 0.64 +1.4 596,771 + yviF DVU0522 0.67 +1.2 596,938 + +0.4 596,938 + +0.1 597,143 - +0.3 597,164 - -0.3 597,259 + +0.0 597,267 - +0.4 597,327 - flgM DVU0523 0.10 +0.4 597,436 + flgM DVU0523 0.45 -0.6 597,473 + flgM DVU0523 0.57 -0.0 597,473 + flgM DVU0523 0.57 -0.6 597,473 + flgM DVU0523 0.57 -0.2 597,473 + flgM DVU0523 0.57 -0.0 597,473 + flgM DVU0523 0.57 -0.1 597,473 + flgM DVU0523 0.57 +0.9 597,473 + flgM DVU0523 0.57 +0.3 597,473 + flgM DVU0523 0.57 +0.1 597,473 + flgM DVU0523 0.57 -0.8 597,481 - flgM DVU0523 0.59 -0.2 597,481 - flgM DVU0523 0.59 -0.1 597,481 - flgM DVU0523 0.59 -0.1 597,481 - flgM DVU0523 0.59 -0.1 597,560 + flgM DVU0523 0.84 -0.3 597,573 - flgM DVU0523 0.89 +0.1 597,582 - -0.6 597,677 + DVU0524 0.10 +0.4 597,690 - DVU0524 0.13 +1.5 597,774 + DVU0524 0.34 +0.2 597,776 + DVU0524 0.34 -0.0 597,813 - DVU0524 0.43 +0.7 597,830 + DVU0524 0.47 -0.5
Or see this region's nucleotide sequence