Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0517 and DVU0518 are separated by 23 nucleotides DVU0518 and DVU0519 overlap by 1 nucleotides DVU0519 and DVU0520 are separated by 11 nucleotides
DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026
DVU0517
DVU0518: DVU0518 - hypothetical protein (TIGR), at 592,050 to 592,514
DVU0518
DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610
DVU0519
DVU0520: DVU0520 - flagellar hook-associated protein FlgL, putative (TIGR), at 594,622 to 596,193
DVU0520
Position (kb) 592
593
594
595 Strain fitness (log2 ratio) -1
0
1
2 at 591.561 kb on - strand, within DVU0517 at 592.036 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.091 kb on + strand at 592.091 kb on + strand at 592.099 kb on - strand, within DVU0518 at 592.099 kb on - strand, within DVU0518 at 592.176 kb on - strand, within DVU0518 at 592.231 kb on - strand, within DVU0518 at 592.251 kb on + strand, within DVU0518 at 592.281 kb on + strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.306 kb on - strand, within DVU0518 at 592.329 kb on + strand, within DVU0518 at 592.334 kb on + strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.342 kb on - strand, within DVU0518 at 592.363 kb on - strand, within DVU0518 at 592.372 kb on + strand, within DVU0518 at 592.376 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.539 kb on - strand at 592.539 kb on - strand at 592.574 kb on + strand at 592.639 kb on - strand at 592.791 kb on - strand, within DVU0519 at 592.847 kb on + strand, within DVU0519 at 592.950 kb on - strand, within DVU0519 at 592.968 kb on + strand, within DVU0519 at 593.076 kb on - strand, within DVU0519 at 593.076 kb on - strand, within DVU0519 at 593.092 kb on - strand, within DVU0519 at 593.098 kb on - strand, within DVU0519 at 593.101 kb on + strand, within DVU0519 at 593.111 kb on + strand, within DVU0519 at 593.196 kb on - strand, within DVU0519 at 593.198 kb on + strand, within DVU0519 at 593.198 kb on + strand, within DVU0519 at 593.249 kb on - strand, within DVU0519 at 593.249 kb on - strand, within DVU0519 at 593.276 kb on - strand, within DVU0519 at 593.317 kb on - strand, within DVU0519 at 593.342 kb on - strand, within DVU0519 at 593.346 kb on + strand, within DVU0519 at 593.346 kb on + strand, within DVU0519 at 593.346 kb on + strand, within DVU0519 at 593.354 kb on + strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.354 kb on - strand, within DVU0519 at 593.381 kb on + strand, within DVU0519 at 593.391 kb on - strand, within DVU0519 at 593.454 kb on - strand, within DVU0519 at 593.454 kb on - strand, within DVU0519 at 593.454 kb on - strand, within DVU0519 at 593.456 kb on + strand, within DVU0519 at 593.464 kb on - strand, within DVU0519 at 593.465 kb on + strand, within DVU0519 at 593.472 kb on + strand, within DVU0519 at 593.482 kb on + strand, within DVU0519 at 593.482 kb on + strand, within DVU0519 at 593.569 kb on + strand, within DVU0519 at 593.577 kb on - strand, within DVU0519 at 593.603 kb on - strand, within DVU0519 at 593.617 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.640 kb on - strand, within DVU0519 at 593.689 kb on + strand, within DVU0519 at 593.735 kb on + strand, within DVU0519 at 593.736 kb on + strand, within DVU0519 at 593.808 kb on + strand, within DVU0519 at 593.818 kb on + strand, within DVU0519 at 593.826 kb on - strand, within DVU0519 at 593.997 kb on + strand, within DVU0519 at 594.132 kb on + strand, within DVU0519 at 594.138 kb on - strand, within DVU0519 at 594.163 kb on - strand, within DVU0519 at 594.192 kb on + strand, within DVU0519 at 594.200 kb on - strand, within DVU0519 at 594.248 kb on - strand, within DVU0519 at 594.288 kb on + strand, within DVU0519 at 594.305 kb on + strand, within DVU0519 at 594.381 kb on + strand, within DVU0519 at 594.390 kb on + strand, within DVU0519 at 594.467 kb on - strand at 594.557 kb on + strand at 594.597 kb on + strand at 594.797 kb on - strand, within DVU0520 at 594.811 kb on - strand, within DVU0520 at 594.824 kb on - strand, within DVU0520 at 594.826 kb on + strand, within DVU0520 at 594.826 kb on + strand, within DVU0520 at 594.834 kb on - strand, within DVU0520 at 594.840 kb on - strand, within DVU0520 at 594.865 kb on + strand, within DVU0520 at 594.865 kb on + strand, within DVU0520 at 594.869 kb on + strand, within DVU0520 at 594.875 kb on - strand, within DVU0520 at 594.888 kb on + strand, within DVU0520 at 594.888 kb on + strand, within DVU0520 at 594.890 kb on + strand, within DVU0520 at 594.896 kb on - strand, within DVU0520 at 594.896 kb on - strand, within DVU0520 at 594.929 kb on + strand, within DVU0520 at 594.979 kb on - strand, within DVU0520 at 595.029 kb on - strand, within DVU0520 at 595.093 kb on - strand, within DVU0520 at 595.289 kb on + strand, within DVU0520 at 595.289 kb on + strand, within DVU0520 at 595.292 kb on + strand, within DVU0520 at 595.301 kb on + strand, within DVU0520 at 595.303 kb on - strand, within DVU0520 at 595.337 kb on - strand, within DVU0520 at 595.357 kb on - strand, within DVU0520 at 595.389 kb on + strand, within DVU0520 at 595.396 kb on + strand, within DVU0520 at 595.466 kb on + strand, within DVU0520 at 595.476 kb on - strand, within DVU0520 at 595.510 kb on - strand, within DVU0520 at 595.564 kb on + strand, within DVU0520
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 591,561 - DVU0517 0.75 -0.4 592,036 + -0.4 592,050 + -0.8 592,050 + +1.5 592,091 + +1.2 592,091 + +1.3 592,099 - DVU0518 0.11 +0.9 592,099 - DVU0518 0.11 +1.3 592,176 - DVU0518 0.27 +1.6 592,231 - DVU0518 0.39 +1.1 592,251 + DVU0518 0.43 +1.8 592,281 + DVU0518 0.50 +1.4 592,289 - DVU0518 0.51 +0.9 592,289 - DVU0518 0.51 +1.3 592,289 - DVU0518 0.51 +1.0 592,306 - DVU0518 0.55 +1.4 592,329 + DVU0518 0.60 +1.2 592,334 + DVU0518 0.61 +0.7 592,337 - DVU0518 0.62 +1.2 592,337 - DVU0518 0.62 +0.9 592,342 - DVU0518 0.63 +1.3 592,363 - DVU0518 0.67 +0.5 592,372 + DVU0518 0.69 +1.2 592,376 + DVU0518 0.70 +1.6 592,433 + DVU0518 0.82 +0.9 592,433 + DVU0518 0.82 +1.7 592,539 - +1.3 592,539 - +1.5 592,574 + +0.9 592,639 - +0.9 592,791 - DVU0519 0.13 +0.9 592,847 + DVU0519 0.16 +1.9 592,950 - DVU0519 0.21 +1.3 592,968 + DVU0519 0.22 +0.7 593,076 - DVU0519 0.27 +1.3 593,076 - DVU0519 0.27 +1.2 593,092 - DVU0519 0.28 +1.1 593,098 - DVU0519 0.28 -0.3 593,101 + DVU0519 0.28 +1.1 593,111 + DVU0519 0.28 +0.7 593,196 - DVU0519 0.33 +1.4 593,198 + DVU0519 0.33 -0.3 593,198 + DVU0519 0.33 +1.0 593,249 - DVU0519 0.35 +1.1 593,249 - DVU0519 0.35 +1.0 593,276 - DVU0519 0.36 +0.5 593,317 - DVU0519 0.38 +1.1 593,342 - DVU0519 0.39 +1.4 593,346 + DVU0519 0.40 +0.7 593,346 + DVU0519 0.40 +1.1 593,346 + DVU0519 0.40 +0.7 593,354 + DVU0519 0.40 -1.2 593,354 - DVU0519 0.40 +0.5 593,354 - DVU0519 0.40 +0.8 593,354 - DVU0519 0.40 +0.7 593,354 - DVU0519 0.40 +1.2 593,381 + DVU0519 0.41 +1.3 593,391 - DVU0519 0.42 +1.2 593,454 - DVU0519 0.45 +1.8 593,454 - DVU0519 0.45 +1.2 593,454 - DVU0519 0.45 +1.1 593,456 + DVU0519 0.45 +0.6 593,464 - DVU0519 0.45 +1.5 593,465 + DVU0519 0.45 +0.7 593,472 + DVU0519 0.46 +1.0 593,482 + DVU0519 0.46 +1.5 593,482 + DVU0519 0.46 +1.3 593,569 + DVU0519 0.50 +1.2 593,577 - DVU0519 0.51 +1.0 593,603 - DVU0519 0.52 +1.4 593,617 - DVU0519 0.53 +1.4 593,640 - DVU0519 0.54 +0.6 593,640 - DVU0519 0.54 +1.1 593,640 - DVU0519 0.54 +1.2 593,640 - DVU0519 0.54 +1.1 593,640 - DVU0519 0.54 +1.0 593,689 + DVU0519 0.56 +1.2 593,735 + DVU0519 0.58 +1.0 593,736 + DVU0519 0.58 +1.7 593,808 + DVU0519 0.62 +1.3 593,818 + DVU0519 0.62 +1.1 593,826 - DVU0519 0.63 +0.8 593,997 + DVU0519 0.71 -0.2 594,132 + DVU0519 0.77 +1.0 594,138 - DVU0519 0.77 +0.9 594,163 - DVU0519 0.79 +0.8 594,192 + DVU0519 0.80 -0.2 594,200 - DVU0519 0.80 +0.6 594,248 - DVU0519 0.83 +1.4 594,288 + DVU0519 0.85 +1.2 594,305 + DVU0519 0.85 +1.0 594,381 + DVU0519 0.89 -0.0 594,390 + DVU0519 0.89 +1.3 594,467 - +1.1 594,557 + +1.3 594,597 + +2.2 594,797 - DVU0520 0.11 -0.4 594,811 - DVU0520 0.12 +0.9 594,824 - DVU0520 0.13 -0.0 594,826 + DVU0520 0.13 +0.4 594,826 + DVU0520 0.13 +0.1 594,834 - DVU0520 0.13 +1.1 594,840 - DVU0520 0.14 +0.8 594,865 + DVU0520 0.15 +0.4 594,865 + DVU0520 0.15 +0.4 594,869 + DVU0520 0.16 +0.7 594,875 - DVU0520 0.16 +0.6 594,888 + DVU0520 0.17 +0.7 594,888 + DVU0520 0.17 +0.4 594,890 + DVU0520 0.17 +1.1 594,896 - DVU0520 0.17 +1.1 594,896 - DVU0520 0.17 +0.9 594,929 + DVU0520 0.20 +1.9 594,979 - DVU0520 0.23 +0.9 595,029 - DVU0520 0.26 +0.8 595,093 - DVU0520 0.30 +0.4 595,289 + DVU0520 0.42 +1.1 595,289 + DVU0520 0.42 +0.9 595,292 + DVU0520 0.43 +2.0 595,301 + DVU0520 0.43 +0.2 595,303 - DVU0520 0.43 +1.9 595,337 - DVU0520 0.45 +1.0 595,357 - DVU0520 0.47 +1.0 595,389 + DVU0520 0.49 +0.8 595,396 + DVU0520 0.49 +1.0 595,466 + DVU0520 0.54 +0.9 595,476 - DVU0520 0.54 +1.7 595,510 - DVU0520 0.56 +1.0 595,564 + DVU0520 0.60 +1.0
Or see this region's nucleotide sequence