Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3362
Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/1-30 mM) |
---|---|---|---|---|---|
remove | |||||
3,532,406 | + | -0.4 | |||
3,532,408 | + | +0.1 | |||
3,532,450 | + | -1.2 | |||
3,532,450 | + | +1.1 | |||
3,532,453 | - | -0.3 | |||
3,532,458 | - | -0.6 | |||
3,532,525 | + | -0.4 | |||
3,532,635 | + | DVU3362 | 0.31 | -1.6 | |
3,532,636 | + | DVU3362 | 0.31 | +0.1 | |
3,532,641 | - | DVU3362 | 0.32 | -1.2 | |
3,532,641 | - | DVU3362 | 0.32 | -0.2 | |
3,532,641 | - | DVU3362 | 0.32 | -0.8 | |
3,532,643 | - | DVU3362 | 0.33 | -0.4 | |
3,532,646 | + | DVU3362 | 0.34 | -0.2 | |
3,532,661 | - | DVU3362 | 0.38 | +1.4 | |
3,532,679 | + | DVU3362 | 0.42 | +0.2 | |
3,532,757 | + | DVU3362 | 0.63 | -0.3 | |
3,532,762 | + | DVU3362 | 0.64 | -0.7 | |
3,532,765 | - | DVU3362 | 0.65 | +0.3 | |
3,532,770 | - | DVU3362 | 0.66 | +0.0 | |
3,532,770 | - | DVU3362 | 0.66 | +0.3 | |
3,532,770 | - | DVU3362 | 0.66 | -0.1 | |
3,532,835 | + | DVU3362 | 0.83 | -0.4 | |
3,532,893 | - | -0.4 | |||
3,532,908 | + | +0.3 | |||
3,532,913 | + | +0.2 | |||
3,532,992 | + | -0.0 | |||
3,532,992 | + | -0.3 | |||
3,533,001 | - | +0.1 | |||
3,533,022 | + | +1.0 | |||
3,533,025 | - | -0.3 | |||
3,533,025 | - | -0.4 | |||
3,533,025 | - | -0.1 | |||
3,533,048 | + | -0.1 | |||
3,533,051 | - | -0.2 | |||
3,533,141 | + | +0.0 | |||
3,533,146 | + | -0.5 | |||
3,533,154 | - | sun | DVU3363 | 0.10 | +1.9 |
3,533,159 | - | sun | DVU3363 | 0.11 | -0.2 |
3,533,178 | + | sun | DVU3363 | 0.12 | +0.1 |
3,533,178 | + | sun | DVU3363 | 0.12 | -1.1 |
3,533,277 | + | sun | DVU3363 | 0.19 | +0.5 |
3,533,289 | + | sun | DVU3363 | 0.19 | -0.2 |
3,533,314 | - | sun | DVU3363 | 0.21 | +0.2 |
3,533,319 | - | sun | DVU3363 | 0.21 | -1.4 |
3,533,319 | - | sun | DVU3363 | 0.21 | +0.6 |
3,533,326 | + | sun | DVU3363 | 0.22 | -1.0 |
3,533,326 | + | sun | DVU3363 | 0.22 | -0.4 |
3,533,329 | - | sun | DVU3363 | 0.22 | -0.9 |
3,533,331 | + | sun | DVU3363 | 0.22 | +0.5 |
3,533,336 | + | sun | DVU3363 | 0.22 | -0.7 |
3,533,336 | + | sun | DVU3363 | 0.22 | -0.6 |
3,533,344 | - | sun | DVU3363 | 0.23 | -0.0 |
3,533,344 | - | sun | DVU3363 | 0.23 | -0.5 |
3,533,344 | - | sun | DVU3363 | 0.23 | +1.2 |
3,533,344 | - | sun | DVU3363 | 0.23 | -0.8 |
3,533,354 | + | sun | DVU3363 | 0.24 | -0.2 |
3,533,439 | - | sun | DVU3363 | 0.29 | +0.5 |
3,533,468 | - | sun | DVU3363 | 0.31 | -1.5 |
3,533,477 | + | sun | DVU3363 | 0.32 | +1.2 |
3,533,480 | - | sun | DVU3363 | 0.32 | -0.5 |
3,533,484 | + | sun | DVU3363 | 0.32 | -0.3 |
3,533,484 | + | sun | DVU3363 | 0.32 | -0.1 |
3,533,484 | + | sun | DVU3363 | 0.32 | -0.4 |
3,533,558 | - | sun | DVU3363 | 0.37 | -1.5 |
3,533,618 | - | sun | DVU3363 | 0.41 | -0.4 |
3,533,619 | - | sun | DVU3363 | 0.41 | -0.6 |
3,533,692 | + | sun | DVU3363 | 0.46 | -0.1 |
3,533,739 | + | sun | DVU3363 | 0.49 | +0.3 |
3,533,753 | - | sun | DVU3363 | 0.50 | -0.9 |
3,533,770 | + | sun | DVU3363 | 0.51 | -0.0 |
3,533,771 | - | sun | DVU3363 | 0.51 | +0.1 |
3,533,800 | + | sun | DVU3363 | 0.53 | -0.3 |
3,533,800 | + | sun | DVU3363 | 0.53 | -1.4 |
3,533,808 | - | sun | DVU3363 | 0.53 | -1.7 |
3,533,808 | - | sun | DVU3363 | 0.53 | -0.5 |
3,533,865 | - | sun | DVU3363 | 0.57 | +0.6 |
3,533,881 | + | sun | DVU3363 | 0.58 | -0.1 |
3,533,896 | + | sun | DVU3363 | 0.59 | +0.3 |
Or see this region's nucleotide sequence