Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3009

Experiment: Formate/Acetate-Sulfate (60/1-30 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/1-30 mM)
3,121,076	-		DVU3008	0.17	+0.6
3,121,096	+		DVU3008	0.19	-1.0
3,121,127	-		DVU3008	0.22	+0.6
3,121,141	+		DVU3008	0.23	-0.1
3,121,176	+		DVU3008	0.27	+0.2
3,121,220	-		DVU3008	0.31	+0.4
3,121,265	-		DVU3008	0.35	+0.3
3,121,288	-		DVU3008	0.37	+0.8
3,121,292	+		DVU3008	0.37	+0.5
3,121,309	-		DVU3008	0.39	+0.3
3,121,413	-		DVU3008	0.49	+0.5
3,121,498	-		DVU3008	0.56	+0.8
3,121,526	-		DVU3008	0.59	+0.1
3,121,680	+		DVU3008	0.73	-0.1
3,121,782	+		DVU3008	0.83	+0.2
3,121,811	+		DVU3008	0.86	+0.7
3,121,837	-		DVU3008	0.88	+0.1
3,121,852	-		DVU3008	0.89	+0.1
3,121,856	+		DVU3008	0.90	-0.1
3,121,861	+				-0.2
3,121,869	-				-0.2
3,121,913	+				-0.0
3,121,926	-				-0.1
3,121,956	-				-0.0
3,122,002	-				+0.4
3,122,002	-				+1.4
3,122,002	-				+0.6
3,122,002	-				+0.7
3,122,012	-				+0.4
3,122,017	+				+0.7
3,122,240	-		DVU3009	0.28	+0.4
3,122,253	+		DVU3009	0.29	+0.9
3,122,321	-		DVU3009	0.36	+0.7
3,122,397	-		DVU3009	0.44	+0.4
3,122,419	+		DVU3009	0.46	+0.3
3,122,500	+		DVU3009	0.55	-0.0
3,122,518	-		DVU3009	0.56	+1.6
3,122,528	-		DVU3009	0.57	+0.5
3,122,528	-		DVU3009	0.57	+0.2
3,122,551	+		DVU3009	0.60	+0.7
3,122,551	+		DVU3009	0.60	+0.6
3,122,584	-		DVU3009	0.63	+0.5
3,122,595	+		DVU3009	0.64	-0.1
3,122,612	+		DVU3009	0.66	+0.4
3,122,612	+		DVU3009	0.66	+1.3
3,122,620	-		DVU3009	0.67	+0.5
3,122,661	+		DVU3009	0.71	+1.4
3,122,662	+		DVU3009	0.71	+0.0
3,122,714	+		DVU3009	0.76	+0.0
3,122,755	-		DVU3009	0.80	+0.3
3,122,771	-		DVU3009	0.82	-0.4
3,122,773	+		DVU3009	0.82	+0.2
3,122,775	+		DVU3009	0.83	+0.9
3,122,781	-		DVU3009	0.83	+0.5
3,122,783	-		DVU3009	0.83	-0.1
3,122,819	-		DVU3009	0.87	+0.1
3,122,831	+		DVU3009	0.88	+0.4
3,122,832	-		DVU3009	0.88	+0.5
3,122,878	-				+0.6
3,123,053	+				+0.7
3,123,170	+	lpsC	DVU3010	0.18	+1.2
3,123,200	+	lpsC	DVU3010	0.21	-1.8
3,123,213	-	lpsC	DVU3010	0.22	+1.5
3,123,237	-	lpsC	DVU3010	0.24	+0.6
3,123,320	+	lpsC	DVU3010	0.31	+0.4
3,123,444	-	lpsC	DVU3010	0.41	+0.5
3,123,519	+	lpsC	DVU3010	0.48	+1.1
3,123,576	+	lpsC	DVU3010	0.53	+0.6
3,123,584	-	lpsC	DVU3010	0.53	+0.4
3,123,628	-	lpsC	DVU3010	0.57	+0.6
3,123,633	+	lpsC	DVU3010	0.57	+0.9
3,123,642	-	lpsC	DVU3010	0.58	-0.7
3,123,642	-	lpsC	DVU3010	0.58	+1.0
3,123,657	-	lpsC	DVU3010	0.59	+1.7
3,123,695	+	lpsC	DVU3010	0.63	+0.5
3,123,702	+	lpsC	DVU3010	0.63	-0.1
3,123,853	-	lpsC	DVU3010	0.76	+0.2
3,123,860	-	lpsC	DVU3010	0.77	+0.3
3,123,860	-	lpsC	DVU3010	0.77	+0.4
3,123,880	-	lpsC	DVU3010	0.78	+1.2
3,123,880	-	lpsC	DVU3010	0.78	+0.5