Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3004

Experiment: Formate/Acetate-Sulfate (60/1-30 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/1-30 mM)
3,114,584	-		DVU3003	0.45	-2.4
3,114,627	+		DVU3003	0.49	+0.1
3,114,635	-		DVU3003	0.49	+1.2
3,114,635	-		DVU3003	0.49	+1.3
3,114,702	+		DVU3003	0.55	+0.3
3,114,791	+		DVU3003	0.63	+2.3
3,114,799	-		DVU3003	0.64	+0.0
3,114,804	-		DVU3003	0.65	-0.5
3,114,836	+		DVU3003	0.67	+0.3
3,114,838	-		DVU3003	0.68	+0.3
3,114,951	-		DVU3003	0.78	+0.3
3,115,001	-		DVU3003	0.82	+0.2
3,115,001	-		DVU3003	0.82	+0.4
3,115,002	-		DVU3003	0.82	+0.4
3,115,033	-		DVU3003	0.85	-0.1
3,115,104	-				-0.3
3,115,108	+				+0.3
3,115,108	+				-0.3
3,115,116	-				+0.6
3,115,194	-				+0.1
3,115,229	-				-0.8
3,115,350	+				+0.1
3,115,352	-				+0.0
3,115,360	+				+1.8
3,115,370	-				+0.2
3,115,370	-				-0.0
3,115,388	+				+0.9
3,115,486	+				-0.2
3,115,490	-				-0.0
3,115,519	-				+0.0
3,115,542	+				-0.2
3,115,550	-				+1.1
3,115,550	-				-0.2
3,115,575	-				+1.7
3,115,603	-				+0.9
3,115,644	-				+0.3
3,115,647	+				+0.4
3,115,667	+				-0.1
3,115,686	+				+0.7
3,115,694	-				+0.5
3,115,825	+		DVU3004	0.17	+0.6
3,115,896	+		DVU3004	0.21	+0.6
3,115,896	+		DVU3004	0.21	+0.9
3,115,896	+		DVU3004	0.21	+0.5
3,115,921	+		DVU3004	0.23	+0.6
3,115,921	+		DVU3004	0.23	+0.1
3,115,929	-		DVU3004	0.23	+0.6
3,115,962	-		DVU3004	0.25	+0.3
3,116,081	-		DVU3004	0.32	+0.5
3,116,125	+		DVU3004	0.35	+0.9
3,116,178	-		DVU3004	0.38	+0.5
3,116,195	+		DVU3004	0.39	+0.4
3,116,203	-		DVU3004	0.39	-0.6
3,116,288	+		DVU3004	0.44	+0.7
3,116,334	+		DVU3004	0.47	+0.2
3,116,334	+		DVU3004	0.47	+0.0
3,116,334	+		DVU3004	0.47	+2.0
3,116,395	-		DVU3004	0.50	+0.5
3,116,454	+		DVU3004	0.54	+0.7
3,116,454	+		DVU3004	0.54	+0.5
3,116,454	+		DVU3004	0.54	+1.0
3,116,462	-		DVU3004	0.54	+0.2
3,116,462	-		DVU3004	0.54	+0.4
3,116,462	-		DVU3004	0.54	+0.2
3,116,462	-		DVU3004	0.54	+0.8
3,116,462	-		DVU3004	0.54	-0.1
3,116,462	-		DVU3004	0.54	+0.6
3,116,462	-		DVU3004	0.54	+0.2
3,116,462	-		DVU3004	0.54	+0.7
3,116,462	-		DVU3004	0.54	-0.2
3,116,486	-		DVU3004	0.56	+0.4
3,116,518	+		DVU3004	0.58	+0.7
3,116,558	-		DVU3004	0.60	+0.7
3,116,576	-		DVU3004	0.61	+0.4
3,116,705	+		DVU3004	0.68	+0.2
3,116,739	+		DVU3004	0.70	+0.4
3,116,742	-		DVU3004	0.70	+0.4
3,116,778	+		DVU3004	0.73	+0.4
3,116,781	-		DVU3004	0.73	+0.7
3,116,786	-		DVU3004	0.73	+0.4
3,116,796	+		DVU3004	0.74	+0.7
3,116,873	+		DVU3004	0.78	-0.4
3,116,889	-		DVU3004	0.79	+0.5
3,116,895	+		DVU3004	0.79	+0.6
3,116,895	+		DVU3004	0.79	+0.2
3,116,940	-		DVU3004	0.82	+0.3
3,116,970	-		DVU3004	0.84	+0.6
3,116,970	-		DVU3004	0.84	+0.7
3,117,042	+		DVU3004	0.88	+0.1
3,117,068	-		DVU3004	0.89	+0.4
3,117,121	+				-0.1
3,117,129	-				+0.6
3,117,129	-				+0.4
3,117,169	+				+0.4
3,117,177	-				+0.4
3,117,214	-				-1.4
3,117,258	-				-0.5
3,117,315	-				+0.3
3,117,328	-				+0.4
3,117,361	+				+0.6
3,117,398	+	rfbE	DVU3005	0.13	+0.9
3,117,398	+	rfbE	DVU3005	0.13	+1.8
3,117,406	-	rfbE	DVU3005	0.14	+0.9
3,117,428	+	rfbE	DVU3005	0.16	+0.6
3,117,428	+	rfbE	DVU3005	0.16	+1.4
3,117,429	-	rfbE	DVU3005	0.16	-0.5
3,117,463	+	rfbE	DVU3005	0.20	+0.5
3,117,536	+	rfbE	DVU3005	0.27	+0.6
3,117,571	-	rfbE	DVU3005	0.30	+0.5
3,117,664	+	rfbE	DVU3005	0.39	+0.0
3,117,727	-	rfbE	DVU3005	0.45	+0.9
3,117,840	-	rfbE	DVU3005	0.56	+0.8
3,117,851	+	rfbE	DVU3005	0.57	+0.8
3,117,888	+	rfbE	DVU3005	0.61	+0.7
3,117,888	+	rfbE	DVU3005	0.61	-0.0
3,117,896	-	rfbE	DVU3005	0.61	+1.3
3,117,925	+	rfbE	DVU3005	0.64	+0.7
3,117,965	-	rfbE	DVU3005	0.68	+1.0
3,117,971	-	rfbE	DVU3005	0.69	+0.0
3,118,025	+	rfbE	DVU3005	0.74	+0.7
3,118,089	-	rfbE	DVU3005	0.80	+1.2
3,118,113	-	rfbE	DVU3005	0.82	+0.3
3,118,113	-	rfbE	DVU3005	0.82	+0.6
3,118,115	+	rfbE	DVU3005	0.83	+0.1
3,118,142	-	rfbE	DVU3005	0.85	+0.0
3,118,170	+	rfbE	DVU3005	0.88	+0.8
3,118,222	-				+0.4