Experiment: Formate/Acetate-Sulfate (60/1-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gdp and hup-2 are separated by 119 nucleotides hup-2 and DORF7327 are separated by 292 nucleotides DORF7327 and DVU0765 overlap by 8 nucleotides DVU0765 and DVU0766 are separated by 198 nucleotides DVU0766 and DVU0767 are separated by 120 nucleotides
DVU0763: gdp - GGDEF domain protein (TIGR), at 853,682 to 854,617
gdp
DVU0764: hup-2 - DNA-binding protein HU (TIGR), at 854,737 to 855,012
hup-2
DORF7327: DORF7327 - no description, at 855,305 to 855,571
DORF7327
DVU0765: DVU0765 - hydroxypyruvate reductase, putative (TIGR), at 855,564 to 856,928
DVU0765
DVU0766: DVU0766 - transporter, putative (TIGR), at 857,127 to 857,657
DVU0766
DVU0767: DVU0767 - aminotransferase, class V (TIGR), at 857,778 to 858,884
DVU0767
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1 at 854.624 kb on - strand at 854.682 kb on - strand at 854.752 kb on - strand at 854.788 kb on + strand, within hup-2 at 854.801 kb on - strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 855.166 kb on + strand at 855.166 kb on + strand at 855.172 kb on - strand at 855.174 kb on - strand at 855.174 kb on - strand at 855.184 kb on - strand at 855.184 kb on - strand at 855.208 kb on - strand at 855.258 kb on - strand at 855.282 kb on + strand at 855.289 kb on + strand at 855.290 kb on - strand at 855.311 kb on - strand at 855.367 kb on + strand, within DORF7327 at 855.385 kb on + strand, within DORF7327 at 855.398 kb on + strand, within DORF7327 at 855.414 kb on - strand, within DORF7327 at 855.453 kb on - strand, within DORF7327 at 855.570 kb on - strand at 855.603 kb on - strand at 855.634 kb on + strand at 855.677 kb on - strand at 855.694 kb on + strand at 855.779 kb on - strand, within DVU0765 at 855.891 kb on - strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 856.027 kb on + strand, within DVU0765 at 856.154 kb on + strand, within DVU0765 at 856.202 kb on + strand, within DVU0765 at 856.270 kb on - strand, within DVU0765 at 856.328 kb on + strand, within DVU0765 at 856.343 kb on + strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.544 kb on + strand, within DVU0765 at 856.552 kb on - strand, within DVU0765 at 856.626 kb on - strand, within DVU0765 at 856.634 kb on - strand, within DVU0765 at 856.668 kb on - strand, within DVU0765 at 856.668 kb on - strand, within DVU0765 at 856.733 kb on + strand, within DVU0765 at 856.737 kb on + strand, within DVU0765 at 856.777 kb on + strand, within DVU0765 at 856.779 kb on + strand, within DVU0765 at 856.787 kb on - strand, within DVU0765 at 856.829 kb on - strand at 856.863 kb on - strand at 856.987 kb on - strand at 857.010 kb on + strand at 857.012 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.083 kb on + strand at 857.143 kb on + strand at 857.266 kb on - strand, within DVU0766 at 857.310 kb on + strand, within DVU0766 at 857.317 kb on - strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.400 kb on + strand, within DVU0766 at 857.401 kb on - strand, within DVU0766 at 857.445 kb on - strand, within DVU0766 at 857.450 kb on - strand, within DVU0766 at 857.520 kb on - strand, within DVU0766 at 857.534 kb on - strand, within DVU0766 at 857.556 kb on - strand, within DVU0766 at 857.596 kb on - strand, within DVU0766 at 857.601 kb on - strand, within DVU0766 at 857.606 kb on - strand at 857.621 kb on + strand at 857.637 kb on + strand at 857.669 kb on - strand at 857.690 kb on - strand at 857.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/1-30 mM) remove 854,624 - -0.7 854,682 - +0.5 854,752 - -0.6 854,788 + hup-2 DVU0764 0.18 +0.1 854,801 - hup-2 DVU0764 0.23 +0.1 854,885 + hup-2 DVU0764 0.54 +0.7 854,885 + hup-2 DVU0764 0.54 +0.3 855,166 + -0.9 855,166 + -2.1 855,172 - -0.2 855,174 - +1.1 855,174 - +0.6 855,184 - -0.3 855,184 - +1.0 855,208 - -0.2 855,258 - +0.9 855,282 + -0.4 855,289 + -0.3 855,290 - -1.1 855,311 - +0.3 855,367 + DORF7327 0.23 -1.8 855,385 + DORF7327 0.30 +0.2 855,398 + DORF7327 0.35 -0.2 855,414 - DORF7327 0.41 -1.0 855,453 - DORF7327 0.55 -0.1 855,570 - +0.1 855,603 - +0.3 855,634 + -0.4 855,677 - -0.3 855,694 + +0.3 855,779 - DVU0765 0.16 -0.0 855,891 - DVU0765 0.24 -0.5 855,908 + DVU0765 0.25 -0.5 855,908 + DVU0765 0.25 +0.1 855,908 + DVU0765 0.25 -0.6 855,908 + DVU0765 0.25 +0.3 856,027 + DVU0765 0.34 -0.1 856,154 + DVU0765 0.43 -0.4 856,202 + DVU0765 0.47 -0.3 856,270 - DVU0765 0.52 -1.4 856,328 + DVU0765 0.56 -0.1 856,343 + DVU0765 0.57 -1.1 856,510 - DVU0765 0.69 -0.4 856,510 - DVU0765 0.69 +0.5 856,510 - DVU0765 0.69 +0.2 856,544 + DVU0765 0.72 -0.6 856,552 - DVU0765 0.72 -0.2 856,626 - DVU0765 0.78 -0.5 856,634 - DVU0765 0.78 -0.2 856,668 - DVU0765 0.81 -0.9 856,668 - DVU0765 0.81 -2.1 856,733 + DVU0765 0.86 +0.2 856,737 + DVU0765 0.86 -0.3 856,777 + DVU0765 0.89 -0.7 856,779 + DVU0765 0.89 -1.8 856,787 - DVU0765 0.90 -0.9 856,829 - -0.7 856,863 - +0.1 856,987 - +0.4 857,010 + -1.1 857,012 - -0.5 857,056 - +0.8 857,056 - -0.4 857,056 - -0.3 857,083 + -0.4 857,143 + +0.7 857,266 - DVU0766 0.26 +0.3 857,310 + DVU0766 0.34 -0.6 857,317 - DVU0766 0.36 -0.1 857,393 + DVU0766 0.50 +0.1 857,393 + DVU0766 0.50 -0.7 857,393 + DVU0766 0.50 +0.7 857,400 + DVU0766 0.51 +0.3 857,401 - DVU0766 0.52 +0.2 857,445 - DVU0766 0.60 -0.1 857,450 - DVU0766 0.61 +0.1 857,520 - DVU0766 0.74 -0.0 857,534 - DVU0766 0.77 -0.5 857,556 - DVU0766 0.81 -0.0 857,596 - DVU0766 0.88 -0.3 857,601 - DVU0766 0.89 -0.3 857,606 - +0.7 857,621 + -0.2 857,637 + -0.5 857,669 - -0.7 857,690 - +0.0 857,829 - -0.4
Or see this region's nucleotide sequence