Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_496 and Pf6N2E2_497 are separated by 0 nucleotides Pf6N2E2_497 and Pf6N2E2_498 are separated by 183 nucleotides
Pf6N2E2_496 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) <small>(from data)</small>, at 562,747 to 564,021
_496
Pf6N2E2_497 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 564,022 to 565,389
_497
Pf6N2E2_498 - Dihydropyrimidinase (EC 3.5.2.2) <small>(from data)</small>, at 565,573 to 567,012
_498
Position (kb) 564
565
566 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.843 kb on + strand, within Pf6N2E2_496 at 563.936 kb on + strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 564.024 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.617 kb on + strand, within Pf6N2E2_497 at 564.617 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.833 kb on + strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 565.028 kb on + strand, within Pf6N2E2_497 at 565.197 kb on + strand, within Pf6N2E2_497 at 565.198 kb on - strand, within Pf6N2E2_497 at 565.256 kb on + strand at 565.262 kb on + strand at 565.262 kb on + strand at 565.656 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.658 kb on + strand at 565.684 kb on + strand at 565.684 kb on + strand at 566.224 kb on + strand, within Pf6N2E2_498 at 566.224 kb on + strand, within Pf6N2E2_498 at 566.234 kb on + strand, within Pf6N2E2_498 at 566.262 kb on - strand, within Pf6N2E2_498 at 566.306 kb on + strand, within Pf6N2E2_498
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 563,022 - Pf6N2E2_496 0.22 -3.3 563,022 - Pf6N2E2_496 0.22 -1.5 563,022 - Pf6N2E2_496 0.22 -4.0 563,036 + Pf6N2E2_496 0.23 -1.8 563,036 + Pf6N2E2_496 0.23 -3.1 563,036 + Pf6N2E2_496 0.23 -2.7 563,522 + Pf6N2E2_496 0.61 -1.4 563,522 + Pf6N2E2_496 0.61 -2.8 563,523 - Pf6N2E2_496 0.61 -3.3 563,523 - Pf6N2E2_496 0.61 -3.1 563,523 - Pf6N2E2_496 0.61 -2.8 563,523 - Pf6N2E2_496 0.61 -3.6 563,523 - Pf6N2E2_496 0.61 -3.3 563,523 - Pf6N2E2_496 0.61 -1.5 563,555 + Pf6N2E2_496 0.63 -3.3 563,555 + Pf6N2E2_496 0.63 -1.8 563,556 - Pf6N2E2_496 0.63 -3.2 563,556 - Pf6N2E2_496 0.63 -3.5 563,843 + Pf6N2E2_496 0.86 -2.9 563,936 + -0.9 563,937 - -3.1 563,937 - -3.1 563,937 - -3.4 563,937 - -3.1 563,937 - -2.9 564,024 - -2.0 564,141 - -3.5 564,141 - -2.8 564,617 + Pf6N2E2_497 0.43 -1.0 564,617 + Pf6N2E2_497 0.43 -1.5 564,815 + Pf6N2E2_497 0.58 -1.4 564,815 + Pf6N2E2_497 0.58 -3.5 564,833 + Pf6N2E2_497 0.59 -3.9 564,834 - Pf6N2E2_497 0.59 -5.3 564,834 - Pf6N2E2_497 0.59 -3.6 564,834 - Pf6N2E2_497 0.59 -3.4 565,028 + Pf6N2E2_497 0.74 -3.1 565,197 + Pf6N2E2_497 0.86 -4.6 565,198 - Pf6N2E2_497 0.86 -3.0 565,256 + -3.1 565,262 + -2.4 565,262 + -2.1 565,656 + -4.3 565,658 + -3.9 565,658 + -3.8 565,658 + -4.8 565,658 + -1.3 565,684 + -4.1 565,684 + -3.0 566,224 + Pf6N2E2_498 0.45 -0.1 566,224 + Pf6N2E2_498 0.45 -3.1 566,234 + Pf6N2E2_498 0.46 -2.2 566,262 - Pf6N2E2_498 0.48 -2.3 566,306 + Pf6N2E2_498 0.51 -4.5
Or see this region's nucleotide sequence