Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36455

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36450 and BPHYT_RS36455 are separated by 0 nucleotidesBPHYT_RS36455 and BPHYT_RS36460 are separated by 12 nucleotidesBPHYT_RS36460 and BPHYT_RS36465 are separated by 58 nucleotides BPHYT_RS36450: BPHYT_RS36450 - hypothetical protein, at 101,360 to 102,559 _RS36450 BPHYT_RS36455: BPHYT_RS36455 - hypothetical protein, at 102,560 to 102,778 _RS36455 BPHYT_RS36460: BPHYT_RS36460 - hypothetical protein, at 102,791 to 103,294 _RS36460 BPHYT_RS36465: BPHYT_RS36465 - DNA-binding protein, at 103,353 to 103,673 _RS36465 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 101.636 kb on - strand, within BPHYT_RS36450at 102.024 kb on - strand, within BPHYT_RS36450at 102.029 kb on - strand, within BPHYT_RS36450at 102.189 kb on + strand, within BPHYT_RS36450at 102.558 kb on - strandat 102.741 kb on - strand, within BPHYT_RS36455at 102.816 kb on - strandat 102.841 kb on - strandat 103.020 kb on - strand, within BPHYT_RS36460at 103.023 kb on - strand, within BPHYT_RS36460at 103.261 kb on - strandat 103.261 kb on - strandat 103.293 kb on - strandat 103.322 kb on - strandat 103.482 kb on + strand, within BPHYT_RS36465at 103.749 kb on + strandat 103.749 kb on + strandat 103.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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101,636 - BPHYT_RS36450 0.23 -0.8
102,024 - BPHYT_RS36450 0.55 -1.6
102,029 - BPHYT_RS36450 0.56 +0.3
102,189 + BPHYT_RS36450 0.69 -0.1
102,558 - -2.1
102,741 - BPHYT_RS36455 0.83 -0.5
102,816 - +0.2
102,841 - -0.1
103,020 - BPHYT_RS36460 0.45 +2.4
103,023 - BPHYT_RS36460 0.46 -0.8
103,261 - -1.2
103,261 - +3.0
103,293 - -0.5
103,322 - -2.3
103,482 + BPHYT_RS36465 0.40 +0.6
103,749 + -0.5
103,749 + -1.8
103,750 - +0.3

Or see this region's nucleotide sequence