Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36425

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36420 and BPHYT_RS36425 are separated by 377 nucleotidesBPHYT_RS36425 and BPHYT_RS36430 are separated by 178 nucleotidesBPHYT_RS36430 and BPHYT_RS36435 overlap by 14 nucleotides BPHYT_RS36420: BPHYT_RS36420 - hypothetical protein, at 97,896 to 98,369 _RS36420 BPHYT_RS36425: BPHYT_RS36425 - hypothetical protein, at 98,747 to 99,136 _RS36425 BPHYT_RS36430: BPHYT_RS36430 - hypothetical protein, at 99,315 to 99,608 _RS36430 BPHYT_RS36435: BPHYT_RS36435 - hypothetical protein, at 99,595 to 99,933 _RS36435 Position (kb) 98 99 100Strain fitness (log2 ratio) -2 -1 0 1 2 3at 98.145 kb on + strand, within BPHYT_RS36420at 98.146 kb on - strand, within BPHYT_RS36420at 98.205 kb on + strand, within BPHYT_RS36420at 99.374 kb on + strand, within BPHYT_RS36430at 99.554 kb on - strand, within BPHYT_RS36430at 99.639 kb on - strand, within BPHYT_RS36435at 99.722 kb on + strand, within BPHYT_RS36435

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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98,145 + BPHYT_RS36420 0.53 +1.5
98,146 - BPHYT_RS36420 0.53 +0.6
98,205 + BPHYT_RS36420 0.65 +3.2
99,374 + BPHYT_RS36430 0.20 +2.3
99,554 - BPHYT_RS36430 0.81 -2.5
99,639 - BPHYT_RS36435 0.13 -0.0
99,722 + BPHYT_RS36435 0.37 -2.5

Or see this region's nucleotide sequence