Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34940 and BPHYT_RS34945 overlap by 8 nucleotides BPHYT_RS34945 and BPHYT_RS34950 are separated by 26 nucleotides BPHYT_RS34950 and BPHYT_RS34955 are separated by 45 nucleotides BPHYT_RS34955 and BPHYT_RS34960 are separated by 0 nucleotides
BPHYT_RS34940: BPHYT_RS34940 - 3-phenylpropionate dioxygenase, at 3,439,366 to 3,440,460
_RS34940
BPHYT_RS34945: BPHYT_RS34945 - 3-ketoacyl-ACP reductase, at 3,440,453 to 3,441,220
_RS34945
BPHYT_RS34950: BPHYT_RS34950 - cupin, at 3,441,247 to 3,441,774
_RS34950
BPHYT_RS34955: BPHYT_RS34955 - alpha/beta hydrolase, at 3,441,820 to 3,442,710
_RS34955
BPHYT_RS34960: BPHYT_RS34960 - IclR family transcriptional regulator, at 3,442,711 to 3,443,595
_RS34960
Position (kb) 3441
3442 Strain fitness (log2 ratio) -1
0
1
2 at 3440.459 kb on - strand at 3440.643 kb on - strand, within BPHYT_RS34945 at 3440.937 kb on - strand, within BPHYT_RS34945 at 3441.084 kb on - strand, within BPHYT_RS34945 at 3441.531 kb on + strand, within BPHYT_RS34950 at 3441.724 kb on - strand at 3441.724 kb on - strand at 3441.841 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 3,440,459 - -0.3 3,440,643 - BPHYT_RS34945 0.25 +0.8 3,440,937 - BPHYT_RS34945 0.63 +0.7 3,441,084 - BPHYT_RS34945 0.82 +2.0 3,441,531 + BPHYT_RS34950 0.54 -1.0 3,441,724 - -0.1 3,441,724 - +0.3 3,441,841 - -0.1
Or see this region's nucleotide sequence