Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33980

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
3,213,550	+		BPHYT_RS33975	0.35	-0.1
3,213,551	-		BPHYT_RS33975	0.35	+0.1
3,213,551	-		BPHYT_RS33975	0.35	+3.9
3,213,551	-		BPHYT_RS33975	0.35	+3.7
3,213,551	-		BPHYT_RS33975	0.35	+0.3
3,213,551	-		BPHYT_RS33975	0.35	+0.7
3,213,807	+		BPHYT_RS33975	0.53	-0.3
3,214,083	+		BPHYT_RS33975	0.72	-0.6
3,214,083	+		BPHYT_RS33975	0.72	-0.6
3,214,083	+		BPHYT_RS33975	0.72	-1.2
3,214,131	+		BPHYT_RS33975	0.75	-1.4
3,214,218	+		BPHYT_RS33975	0.81	-1.8
3,214,297	+		BPHYT_RS33975	0.87	+0.4
3,214,297	+		BPHYT_RS33975	0.87	-0.7
3,214,464	+				-1.0
3,214,464	+				-0.7
3,214,477	-				+1.2
3,214,485	+				-1.0
3,214,486	-				+1.3
3,214,486	-				+0.7
3,214,490	-				+1.8
3,214,492	+				+0.1
3,214,493	-				+1.3
3,214,493	-				+0.5
3,214,497	+				+0.2
3,214,590	+				+0.7
3,214,591	-				+0.4
3,214,680	-				+0.9
3,214,684	-				+0.1
3,215,085	+		BPHYT_RS33980	0.21	-1.9
3,215,086	-		BPHYT_RS33980	0.21	+1.5
3,215,134	-		BPHYT_RS33980	0.22	+1.4
3,215,134	-		BPHYT_RS33980	0.22	+0.5
3,215,136	+		BPHYT_RS33980	0.22	+0.4
3,215,136	+		BPHYT_RS33980	0.22	+1.3
3,215,253	+		BPHYT_RS33980	0.27	+0.4
3,215,253	+		BPHYT_RS33980	0.27	+1.0
3,215,254	-		BPHYT_RS33980	0.27	+1.1
3,215,455	-		BPHYT_RS33980	0.34	+1.7
3,215,502	+		BPHYT_RS33980	0.36	+0.6
3,215,553	+		BPHYT_RS33980	0.38	+0.5
3,215,554	-		BPHYT_RS33980	0.38	+0.7
3,215,604	+		BPHYT_RS33980	0.40	+2.4
3,215,605	-		BPHYT_RS33980	0.40	+1.0
3,215,779	-		BPHYT_RS33980	0.46	+1.9
3,215,974	-		BPHYT_RS33980	0.53	+3.0
3,216,001	-		BPHYT_RS33980	0.54	+1.0
3,216,034	-		BPHYT_RS33980	0.55	-0.7
3,216,140	+		BPHYT_RS33980	0.59	+0.6
3,216,141	-		BPHYT_RS33980	0.59	+1.7
3,216,141	-		BPHYT_RS33980	0.59	+1.3
3,216,199	+		BPHYT_RS33980	0.62	+2.6
3,216,281	+		BPHYT_RS33980	0.65	+0.5
3,216,285	+		BPHYT_RS33980	0.65	+1.9
3,216,286	-		BPHYT_RS33980	0.65	+0.7
3,216,286	-		BPHYT_RS33980	0.65	+2.0
3,216,369	+		BPHYT_RS33980	0.68	+1.0
3,216,454	-		BPHYT_RS33980	0.71	+2.6
3,216,832	-		BPHYT_RS33980	0.85	+0.5
3,216,876	+		BPHYT_RS33980	0.86	+0.6
3,216,932	+		BPHYT_RS33980	0.88	+1.6
3,216,933	-		BPHYT_RS33980	0.89	-0.0
3,217,060	-				+0.5
3,217,247	+				+1.0
3,217,248	-				+1.3
3,217,256	-				+1.5
3,217,505	+		BPHYT_RS33985	0.14	-0.3
3,217,657	+		BPHYT_RS33985	0.28	-0.4
3,217,817	-		BPHYT_RS33985	0.43	-0.1
3,217,817	-		BPHYT_RS33985	0.43	-2.1
3,217,915	+		BPHYT_RS33985	0.52	+0.2
3,217,916	-		BPHYT_RS33985	0.52	-0.6
3,217,979	+		BPHYT_RS33985	0.58	-0.3
3,218,054	-		BPHYT_RS33985	0.65	-0.6
3,218,054	-		BPHYT_RS33985	0.65	+0.4
3,218,133	+		BPHYT_RS33985	0.72	-0.8