Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32625

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Deoxyribonucleic from herring sperm 10 mg/mL (C)
2,889,404	-		BPHYT_RS32620	0.75	+1.8
2,889,426	+		BPHYT_RS32620	0.76	+0.7
2,889,426	+		BPHYT_RS32620	0.76	-0.8
2,889,427	-		BPHYT_RS32620	0.76	+0.5
2,889,427	-		BPHYT_RS32620	0.76	-1.1
2,889,427	-		BPHYT_RS32620	0.76	-1.7
2,889,460	-		BPHYT_RS32620	0.78	+0.1
2,889,460	-		BPHYT_RS32620	0.78	+1.9
2,889,475	+		BPHYT_RS32620	0.79	-0.7
2,889,493	-		BPHYT_RS32620	0.80	-0.5
2,889,498	+		BPHYT_RS32620	0.80	+0.4
2,889,506	+		BPHYT_RS32620	0.81	+0.4
2,889,507	-		BPHYT_RS32620	0.81	+0.3
2,889,753	+				+0.3
2,889,754	-				-0.1
2,889,943	+				+0.8
2,889,944	-				-0.2
2,889,944	-				-0.3
2,889,955	+				+0.4
2,889,955	+				-0.5
2,890,051	+				+0.1
2,890,052	-				-0.7
2,890,205	-				-1.1
2,890,205	-				-1.3
2,890,205	-				+0.2
2,890,210	+				+0.5
2,890,211	-				+0.1
2,890,211	-				+0.3
2,890,252	+				-0.6
2,890,252	+				+2.9
2,890,253	-				+0.2
2,890,381	+		BPHYT_RS32625	0.11	+0.3
2,890,464	-		BPHYT_RS32625	0.12	+0.8
2,890,517	-		BPHYT_RS32625	0.13	+0.9
2,890,517	-		BPHYT_RS32625	0.13	+0.3
2,890,517	-		BPHYT_RS32625	0.13	-0.1
2,890,517	-		BPHYT_RS32625	0.13	-1.1
2,890,907	-		BPHYT_RS32625	0.22	+0.0
2,891,149	+		BPHYT_RS32625	0.27	+0.4
2,891,156	-		BPHYT_RS32625	0.27	+1.0
2,891,163	-		BPHYT_RS32625	0.27	+1.0
2,891,229	-		BPHYT_RS32625	0.28	-0.3
2,891,363	-		BPHYT_RS32625	0.31	-1.5
2,891,627	-		BPHYT_RS32625	0.37	+0.7
2,891,627	-		BPHYT_RS32625	0.37	+1.1
2,891,788	+		BPHYT_RS32625	0.40	-0.6
2,891,789	-		BPHYT_RS32625	0.40	+2.8
2,891,812	+		BPHYT_RS32625	0.40	+0.8
2,891,812	+		BPHYT_RS32625	0.40	-0.7
2,891,813	-		BPHYT_RS32625	0.40	-0.6
2,891,813	-		BPHYT_RS32625	0.40	-0.5
2,891,813	-		BPHYT_RS32625	0.40	-1.0
2,892,064	+		BPHYT_RS32625	0.46	-1.8
2,892,065	-		BPHYT_RS32625	0.46	-0.6
2,892,065	-		BPHYT_RS32625	0.46	-0.2
2,892,068	+		BPHYT_RS32625	0.46	+2.2
2,892,118	+		BPHYT_RS32625	0.47	+1.1
2,892,163	+		BPHYT_RS32625	0.48	-1.2
2,892,163	+		BPHYT_RS32625	0.48	-0.4
2,892,262	+		BPHYT_RS32625	0.50	+0.4
2,892,262	+		BPHYT_RS32625	0.50	-3.0
2,892,338	-		BPHYT_RS32625	0.51	+0.2
2,892,338	-		BPHYT_RS32625	0.51	+0.7
2,892,569	-		BPHYT_RS32625	0.56	-2.3
2,892,729	-		BPHYT_RS32625	0.60	+2.1
2,892,729	-		BPHYT_RS32625	0.60	-0.0
2,892,834	+		BPHYT_RS32625	0.62	+0.8
2,892,953	-		BPHYT_RS32625	0.64	+0.7
2,893,041	-		BPHYT_RS32625	0.66	-0.4
2,893,219	+		BPHYT_RS32625	0.70	-3.0
2,893,220	-		BPHYT_RS32625	0.70	+1.5
2,893,267	+		BPHYT_RS32625	0.71	+0.7
2,893,294	+		BPHYT_RS32625	0.71	+1.3
2,893,309	+		BPHYT_RS32625	0.72	-1.5
2,893,310	-		BPHYT_RS32625	0.72	-0.1
2,893,367	+		BPHYT_RS32625	0.73	+2.2
2,893,535	-		BPHYT_RS32625	0.76	-1.0
2,893,573	+		BPHYT_RS32625	0.77	+1.2
2,893,574	-		BPHYT_RS32625	0.77	-0.4
2,893,592	-		BPHYT_RS32625	0.78	-0.5
2,893,642	+		BPHYT_RS32625	0.79	-0.1
2,893,642	+		BPHYT_RS32625	0.79	-0.2
2,893,643	-		BPHYT_RS32625	0.79	+0.1
2,893,881	-		BPHYT_RS32625	0.84	+1.3
2,893,882	+		BPHYT_RS32625	0.84	+0.4
2,893,882	+		BPHYT_RS32625	0.84	+0.4
2,893,882	+		BPHYT_RS32625	0.84	+0.7
2,893,883	-		BPHYT_RS32625	0.84	+1.3
2,893,946	+		BPHYT_RS32625	0.85	+0.2
2,894,036	-		BPHYT_RS32625	0.87	-0.5
2,894,213	+				-1.5
2,894,811	+		BPHYT_RS32630	0.17	-1.2
2,894,812	-		BPHYT_RS32630	0.17	+1.9
2,894,920	+		BPHYT_RS32630	0.29	-1.5
2,894,921	-		BPHYT_RS32630	0.30	+0.2
2,894,952	+		BPHYT_RS32630	0.33	-0.7
2,894,952	+		BPHYT_RS32630	0.33	+0.0
2,895,454	+				-0.3
2,895,455	-				-0.5
2,895,490	+				+0.2
2,895,490	+				+0.3
2,895,490	+				+0.0
2,895,491	-				-0.8
2,895,629	+				+0.7
2,895,629	+				-0.4