Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26955 and BPHYT_RS26960 are separated by 155 nucleotides BPHYT_RS26960 and BPHYT_RS26965 are separated by 73 nucleotides BPHYT_RS26965 and BPHYT_RS26970 overlap by 14 nucleotides
BPHYT_RS26955: BPHYT_RS26955 - succinylglutamate desuccinylase, at 1,625,416 to 1,626,429
_RS26955
BPHYT_RS26960: BPHYT_RS26960 - LysR family transcriptional regulator, at 1,626,585 to 1,627,469
_RS26960
BPHYT_RS26965: BPHYT_RS26965 - L-lactate dehydrogenase, LldG subunit <small>(from data)</small>, at 1,627,543 to 1,628,130
_RS26965
BPHYT_RS26970: BPHYT_RS26970 - L-lactate dehydrogenase, LldF subunit <small>(from data)</small>, at 1,628,117 to 1,629,511
_RS26970
Position (kb) 1626
1627
1628 Strain fitness (log2 ratio) -1
0
1
2
3 at 1625.813 kb on - strand, within BPHYT_RS26955 at 1626.491 kb on - strand at 1626.491 kb on - strand at 1626.500 kb on - strand at 1626.554 kb on + strand at 1626.554 kb on + strand at 1626.856 kb on + strand, within BPHYT_RS26960 at 1627.279 kb on + strand, within BPHYT_RS26960 at 1627.769 kb on + strand, within BPHYT_RS26965 at 1628.212 kb on + strand at 1628.213 kb on - strand at 1628.225 kb on - strand at 1628.286 kb on + strand, within BPHYT_RS26970 at 1628.385 kb on + strand, within BPHYT_RS26970 at 1628.386 kb on - strand, within BPHYT_RS26970 at 1628.467 kb on + strand, within BPHYT_RS26970
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 1,625,813 - BPHYT_RS26955 0.39 -1.0 1,626,491 - +0.2 1,626,491 - +1.5 1,626,500 - +0.1 1,626,554 + -0.6 1,626,554 + -0.4 1,626,856 + BPHYT_RS26960 0.31 +0.4 1,627,279 + BPHYT_RS26960 0.78 -0.9 1,627,769 + BPHYT_RS26965 0.38 +2.8 1,628,212 + -0.2 1,628,213 - +0.3 1,628,225 - -0.5 1,628,286 + BPHYT_RS26970 0.12 +0.0 1,628,385 + BPHYT_RS26970 0.19 +0.1 1,628,386 - BPHYT_RS26970 0.19 -1.0 1,628,467 + BPHYT_RS26970 0.25 +3.6
Or see this region's nucleotide sequence