Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26955

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26950 and BPHYT_RS26955 are separated by 37 nucleotidesBPHYT_RS26955 and BPHYT_RS26960 are separated by 155 nucleotides BPHYT_RS26950: BPHYT_RS26950 - MFS transporter, at 1,623,963 to 1,625,378 _RS26950 BPHYT_RS26955: BPHYT_RS26955 - succinylglutamate desuccinylase, at 1,625,416 to 1,626,429 _RS26955 BPHYT_RS26960: BPHYT_RS26960 - LysR family transcriptional regulator, at 1,626,585 to 1,627,469 _RS26960 Position (kb) 1625 1626 1627Strain fitness (log2 ratio) -1 0 1at 1624.428 kb on - strand, within BPHYT_RS26950at 1624.428 kb on - strand, within BPHYT_RS26950at 1624.541 kb on - strand, within BPHYT_RS26950at 1624.910 kb on + strand, within BPHYT_RS26950at 1624.911 kb on - strand, within BPHYT_RS26950at 1624.913 kb on - strand, within BPHYT_RS26950at 1625.813 kb on - strand, within BPHYT_RS26955at 1626.491 kb on - strandat 1626.491 kb on - strandat 1626.500 kb on - strandat 1626.554 kb on + strandat 1626.554 kb on + strandat 1626.856 kb on + strand, within BPHYT_RS26960at 1627.279 kb on + strand, within BPHYT_RS26960

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,624,428 - BPHYT_RS26950 0.33 +0.1
1,624,428 - BPHYT_RS26950 0.33 +0.6
1,624,541 - BPHYT_RS26950 0.41 -0.9
1,624,910 + BPHYT_RS26950 0.67 -1.3
1,624,911 - BPHYT_RS26950 0.67 -0.6
1,624,913 - BPHYT_RS26950 0.67 +0.2
1,625,813 - BPHYT_RS26955 0.39 -1.0
1,626,491 - +0.2
1,626,491 - +1.5
1,626,500 - +0.1
1,626,554 + -0.6
1,626,554 + -0.4
1,626,856 + BPHYT_RS26960 0.31 +0.4
1,627,279 + BPHYT_RS26960 0.78 -0.9

Or see this region's nucleotide sequence