Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22705

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22700 and BPHYT_RS22705 are separated by 131 nucleotidesBPHYT_RS22705 and BPHYT_RS22710 overlap by 1 nucleotides BPHYT_RS22700: BPHYT_RS22700 - FAD-dependent oxidoreductase, at 648,156 to 649,436 _RS22700 BPHYT_RS22705: BPHYT_RS22705 - hypothetical protein, at 649,568 to 650,350 _RS22705 BPHYT_RS22710: BPHYT_RS22710 - XRE family transcriptional regulator, at 650,350 to 650,919 _RS22710 Position (kb) 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2 3at 648.590 kb on - strand, within BPHYT_RS22700at 648.590 kb on - strand, within BPHYT_RS22700at 648.590 kb on - strand, within BPHYT_RS22700at 648.613 kb on + strand, within BPHYT_RS22700at 648.613 kb on + strand, within BPHYT_RS22700at 648.679 kb on + strand, within BPHYT_RS22700at 648.890 kb on - strand, within BPHYT_RS22700at 649.157 kb on - strand, within BPHYT_RS22700at 649.215 kb on - strand, within BPHYT_RS22700at 650.302 kb on - strandat 650.334 kb on + strandat 650.410 kb on - strand, within BPHYT_RS22710at 650.449 kb on - strand, within BPHYT_RS22710at 650.784 kb on + strand, within BPHYT_RS22710at 650.825 kb on + strand, within BPHYT_RS22710at 650.948 kb on + strandat 650.949 kb on - strandat 650.954 kb on - strandat 650.976 kb on + strandat 650.976 kb on + strandat 651.081 kb on - strandat 651.198 kb on - strandat 651.198 kb on - strandat 651.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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648,590 - BPHYT_RS22700 0.34 -0.5
648,590 - BPHYT_RS22700 0.34 -0.0
648,590 - BPHYT_RS22700 0.34 -0.2
648,613 + BPHYT_RS22700 0.36 +0.8
648,613 + BPHYT_RS22700 0.36 +1.2
648,679 + BPHYT_RS22700 0.41 +0.1
648,890 - BPHYT_RS22700 0.57 -0.9
649,157 - BPHYT_RS22700 0.78 +0.4
649,215 - BPHYT_RS22700 0.83 +0.1
650,302 - -1.9
650,334 + +0.4
650,410 - BPHYT_RS22710 0.11 +0.9
650,449 - BPHYT_RS22710 0.17 +0.5
650,784 + BPHYT_RS22710 0.76 +3.1
650,825 + BPHYT_RS22710 0.83 +2.2
650,948 + +0.5
650,949 - +1.5
650,954 - +0.3
650,976 + +0.2
650,976 + -1.1
651,081 - -0.5
651,198 - +0.6
651,198 - +0.0
651,198 - +0.2

Or see this region's nucleotide sequence